FERRE', FABRIZIO
FERRE', FABRIZIO
DIPARTIMENTO DI FARMACIA E BIOTECNOLOGIE
Docenti di ruolo di IIa fascia
A novel approach to represent and compare RNA secondary structures.
2014 Mattei E;Ausiello G;Ferrè F;Helmer-Citterich M
A novel method for the identification of conserved structural patterns in RNA: From small scale to high-throughput applications
2016 Pietrosanto, Marco; Mattei, Eugenio; Helmer-Citterich, Manuela; Ferrè, Fabrizio
A proteome-wide Domain-centric Perspective on Protein Phosphorylation.
2014 Palmeri A;Ausiello G;Ferre F;Helmer-Citterich M;Gherardini PF
A simple protocol for the inference of RNA global pairwise alignments
2015 Mattei, Eugenio; Helmer-Citterich, Manuela; Ferrè, Fabrizio
Alternative splicing tends to avoid partial removals of protein-protein interaction sites
2013 Colantoni A;Bianchi V;Gherardini PF;Scalia Tomba G;Ausiello G;Helmer Citterich M;FERRE' F.
Axitinib exposure triggers endothelial cells senescence through ROS accumulation and ATM activation
2019 Mongiardi M.P.; Radice G.; Piras M.; Stagni V.; Pacioni S.; Re A.; Putti S.; Ferre F.; Farsetti A.; Pallini R.; Barila D.; Levi A.; Falchetti M.L.
BEAM web server: A tool for structural RNA motif discovery
2018 Pietrosanto, Marco; Adinolfi, Marta; Casula, Riccardo; Ausiello, Gabriele; Ferrè, Fabrizio; Helmer-Citterich, Manuela
BTW: A web server for Boltzmann time warping for gene expression time series
2006 FERRE' F.;CLOTE P
c-MYC inhibition impairs hypoxia response in glioblastoma multiforme
2016 Mongiardi, Maria Patrizia; Savino, Mauro; Falchetti, Maria Laura; Illi, Barbara; Bozzo, Francesca; Valle, Cristiana; Helmer-Citterich, Manuela; Ferrè, Fabrizio; Nasi, Sergio; Levi, Andrea
Caspase-8 contributes to angiogenesis and chemotherapy resistance in glioblastoma
2017 Fianco, Giulia; Mongiardi, Maria Patrizia; Levi, Andrea; Luca, Teresa De; Desideri, Marianna; Trisciuoglio, Daniela; Bufalo, Donatella Del; Cinã , Irene; Benedetto, Anna Di; Mottolese, Marcella; Gentile, Antonietta; Centonze, Diego; Ferrè, Fabrizio; Barilà , Daniela
Coding potential of the products of alternative splicing in human
2011 Leoni G;Le Pera L;FERRE' F.;Raimondo D;Tramontano A
Comparison of two NGS platforms for metagenomic analysis of clinical samples
2017 Tommaso, Biagini; Barbara, Bartolini; Emanuela, Giombini; Fabrizio, Ferrè; Marina, Selleri; Gabriella, Rozera; Capobianchi, Maria R.; Giovanni, Chillemi; Alessandro, Desideri
Computational methods for analysis and inference of kinase/inhibitor relationships.
2014 Ferrè F;Palmeri A;Helmer-Citterich M
DBATE: DataBase of Alternative Transcripts Expression
2013 Bianchi V;Colantoni A;Gherardini PF;Ausiello G;FERRE' F.;Helmer Citterich M
Development of computational tools for the inference of protein interaction specificity rules and functional annotation using structural information
2003 Ferrè Fabrizio.; Via Allegra; Ausiello G.; Brannetti B.; Zanzoni A.; Helmer-Citterich M.
DIAL: A web server for RNA structural alignment using dihedral angles
2007 FERRE' F.;LORENZ W.A;PONTY Y;CLOTE P
DiANNA 1.1: an extension of the DiANNA web server for ternary cysteine classification
2006 FERRE' F.;CLOTE P
DiANNA: a web server for disulfide connectivity prediction
2005 FERRE' F.;CLOTE P
Discovering sequence and structure landscapes in RNA interaction motifs
2019 Adinolfi M.; Pietrosanto M.; Parca L.; Ausiello G.; Ferre F.; Helmer-Citterich M.
Disulfide connectivity prediction using secondary structure information and diresidue frequencies
2005 FERRE' F.;CLOTE P
| Titolo | Autore(i) | Anno | Periodico | Editore | Tipo | File |
|---|---|---|---|---|---|---|
| A novel approach to represent and compare RNA secondary structures. | Mattei E;Ausiello G;Ferrè F;Helmer-Citterich M | 2014-01-01 | NUCLEIC ACIDS RESEARCH | - | 1.01 Articolo in rivista | Mattei_NAR2014.pdf |
| A novel method for the identification of conserved structural patterns in RNA: From small scale to high-throughput applications | Pietrosanto, Marco; Mattei, Eugenio; Helmer-Citterich, Manuela; Ferrè, Fabrizio | 2016-01-01 | NUCLEIC ACIDS RESEARCH | - | 1.01 Articolo in rivista | Pietrosanto_NAR2016.pdf |
| A proteome-wide Domain-centric Perspective on Protein Phosphorylation. | Palmeri A;Ausiello G;Ferre F;Helmer-Citterich M;Gherardini PF | 2014-01-01 | MOLECULAR & CELLULAR PROTEOMICS | - | 1.01 Articolo in rivista | - |
| A simple protocol for the inference of RNA global pairwise alignments | Mattei, Eugenio; Helmer-Citterich, Manuela; Ferrè, Fabrizio | 2015-01-01 | METHODS IN MOLECULAR BIOLOGY | Springer | 2.01 Capitolo / saggio in libro | - |
| Alternative splicing tends to avoid partial removals of protein-protein interaction sites | Colantoni A;Bianchi V;Gherardini PF;Scalia Tomba G;Ausiello G;Helmer Citterich M;FERRE' F. | 2013-01-01 | BMC GENOMICS | - | 1.01 Articolo in rivista | - |
| Axitinib exposure triggers endothelial cells senescence through ROS accumulation and ATM activation | Mongiardi M.P.; Radice G.; Piras M.; Stagni V.; Pacioni S.; Re A.; Putti S.; Ferre F.; Farsetti A....; Pallini R.; Barila D.; Levi A.; Falchetti M.L. | 2019-01-01 | ONCOGENE | - | 1.01 Articolo in rivista | - |
| BEAM web server: A tool for structural RNA motif discovery | Pietrosanto, Marco; Adinolfi, Marta; Casula, Riccardo; Ausiello, Gabriele; Ferrè, Fabrizio; Helme...r-Citterich, Manuela | 2018-01-01 | BIOINFORMATICS | - | 1.01 Articolo in rivista | - |
| BTW: A web server for Boltzmann time warping for gene expression time series | FERRE' F.;CLOTE P | 2006-01-01 | NUCLEIC ACIDS RESEARCH | - | 1.01 Articolo in rivista | - |
| c-MYC inhibition impairs hypoxia response in glioblastoma multiforme | Mongiardi, Maria Patrizia; Savino, Mauro; Falchetti, Maria Laura; Illi, Barbara; Bozzo, Francesca...; Valle, Cristiana; Helmer-Citterich, Manuela; Ferrè, Fabrizio; Nasi, Sergio; Levi, Andrea | 2016-01-01 | ONCOTARGET | - | 1.01 Articolo in rivista | - |
| Caspase-8 contributes to angiogenesis and chemotherapy resistance in glioblastoma | Fianco, Giulia; Mongiardi, Maria Patrizia; Levi, Andrea; Luca, Teresa De; Desideri, Marianna; Tri...sciuoglio, Daniela; Bufalo, Donatella Del; Cinã , Irene; Benedetto, Anna Di; Mottolese, Marcella; Gentile, Antonietta; Centonze, Diego; Ferrè, Fabrizio; Barilà , Daniela | 2017-01-01 | ELIFE | - | 1.01 Articolo in rivista | Fianco_elife2017.pdf |
| Coding potential of the products of alternative splicing in human | Leoni G;Le Pera L;FERRE' F.;Raimondo D;Tramontano A | 2011-01-01 | GENOME BIOLOGY | - | 1.01 Articolo in rivista | - |
| Comparison of two NGS platforms for metagenomic analysis of clinical samples | Tommaso, Biagini; Barbara, Bartolini; Emanuela, Giombini; Fabrizio, Ferrè; Marina, Selleri; Gabri...ella, Rozera; Capobianchi, Maria R.; Giovanni, Chillemi; Alessandro, Desideri | 2017-01-01 | JOURNAL OF BIOCHEMICAL TECHNOLOGY | - | 1.01 Articolo in rivista | - |
| Computational methods for analysis and inference of kinase/inhibitor relationships. | Ferrè F;Palmeri A;Helmer-Citterich M | 2014-01-01 | FRONTIERS IN GENETICS | - | 1.01 Articolo in rivista | Ferre_FrontiersGenetics2014.pdf |
| DBATE: DataBase of Alternative Transcripts Expression | Bianchi V;Colantoni A;Gherardini PF;Ausiello G;FERRE' F.;Helmer Citterich M | 2013-01-01 | DATABASE | - | 1.01 Articolo in rivista | - |
| Development of computational tools for the inference of protein interaction specificity rules and functional annotation using structural information | Ferrè Fabrizio.; Via Allegra; Ausiello G.; Brannetti B.; Zanzoni A.; Helmer-Citterich M. | 2003-01-01 | COMPARATIVE AND FUNCTIONAL GENOMICS | - | 1.01 Articolo in rivista | - |
| DIAL: A web server for RNA structural alignment using dihedral angles | FERRE' F.;LORENZ W.A;PONTY Y;CLOTE P | 2007-01-01 | NUCLEIC ACIDS RESEARCH | - | 1.01 Articolo in rivista | - |
| DiANNA 1.1: an extension of the DiANNA web server for ternary cysteine classification | FERRE' F.;CLOTE P | 2006-01-01 | NUCLEIC ACIDS RESEARCH | - | 1.01 Articolo in rivista | - |
| DiANNA: a web server for disulfide connectivity prediction | FERRE' F.;CLOTE P | 2005-01-01 | NUCLEIC ACIDS RESEARCH | - | 1.01 Articolo in rivista | - |
| Discovering sequence and structure landscapes in RNA interaction motifs | Adinolfi M.; Pietrosanto M.; Parca L.; Ausiello G.; Ferre F.; Helmer-Citterich M. | 2019-01-01 | NUCLEIC ACIDS RESEARCH | - | 1.01 Articolo in rivista | Adinolfi_NAR2019.pdf |
| Disulfide connectivity prediction using secondary structure information and diresidue frequencies | FERRE' F.;CLOTE P | 2005-01-01 | BIOINFORMATICS | - | 1.01 Articolo in rivista | - |