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MANFREDI, MATTEO

MANFREDI, MATTEO  

FABIT - DIPARTIMENTO DI FARMACIA E BIOTECNOLOGIE  

Personale tecnico amm.vo  

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Risultati 1 - 14 di 14 (tempo di esecuzione: 0.015 secondi).
Titolo Autore(i) Anno Periodico Editore Tipo File
AlphaFold2 and ESMFold: A large-scale pairwise model comparison of human enzymes upon Pfam functional annotation Manfredi, Matteo; Vazzana, Gabriele; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita 2025-01-01 COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL - 1.01 Articolo in rivista -
DDGemb: predicting protein stability change upon single- and multi-point variations with embeddings and deep learning Savojardo, Castrense; Manfredi, Matteo; Martelli, Pier Luigi; Casadio, Rita 2025-01-01 BIOINFORMATICS - 1.01 Articolo in rivista -
Evaluating predictors of kinase activity of STK11 variants identified in primary human non-small cell lung cancers Chen, Yile; Lee, Kyoungyeul; Woo, Junwoo; Kim, Dong-wook; Keum, Changwon; Babbi, Giulia; Casadio,... Rita; Martelli, Pier Luigi; Savojardo, Castrense; Manfredi, Matteo; Shen, Yang; Sun, Yuanfei; Katsonis, Panagiotis; Lichtarge, Olivier; Pejaver, Vikas; Seward, David J.; Kamandula, Akash; Bakolitsa, Constantina; Brenner, Steven E.; Radivojac, Predrag; O'Donnell-Luria, Anne; Mooney, Sean D.; Jain, Shantanu 2025-01-01 HUMAN GENETICS - 1.01 Articolo in rivista -
Evaluation of enzyme activity predictions for variants of unknown significance in Arylsulfatase A Jain, Shantanu; Trinidad, Marena; Nguyen, Thanh Binh; Jones, Kaiya; Neto, Santiago Diaz; Ge, Fang...; Glagovsky, Ailin; Jones, Cameron; Moran, Giankaleb; Wang, Boqi; Rahimi, Kobra; Çalıcı, Sümeyra Zeynep; Cedillo, Luis R.; Berardelli, Silvia; Özden, Buse; Chen, Ken; Katsonis, Panagiotis; Williams, Amanda; Lichtarge, Olivier; Rana, Sadhna; Pradhan, Swatantra; Srinivasan, Rajgopal; Sajeed, Rakshanda; Joshi, Dinesh; Faraggi, Eshel; Jernigan, Robert; Kloczkowski, Andrzej; Xu, Jierui; Song, Zigang; Özkan, Selen; Padilla, Natàlia; de la Cruz, Xavier; Acuna-Hidalgo, Rocio; Grafmüller, Andrea; Barrón, Laura T. Jiménez; Manfredi, Matteo; Savojardo, Castrense; Babbi, Giulia; Martelli, Pier Luigi; Casadio, Rita; Sun, Yuanfei; Zhu, Shaowen; Shen, Yang; Pucci, Fabrizio; Rooman, Marianne; Cia, Gabriel; Raimondi, Daniele; Hermans, Pauline; Kwee, Sofia; Chen, Ella; Astore, Courtney; Kamandula, Akash; Pejaver, Vikas; Ramola, Rashika; Velyunskiy, Michelle; Zeiberg, Daniel; Mishra, Reet; Sterling, Teague; Goldstein, Jennifer L.; Lugo-Martinez, Jose; Kazi, Sufyan; Li, Sindy; Long, Kinsey; Brenner, Steven E.; Bakolitsa, Constantina; Radivojac, Predrag; Suhr, Dean; Suhr, Teryn; Clark, Wyatt T. 2025-01-01 HUMAN GENETICS - 1.01 Articolo in rivista -
Evaluation of the structural models of the human reference proteome: AlphaFold2 versus ESMFold Manfredi, Matteo; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita 2025-01-01 CURRENT RESEARCH IN STRUCTURAL BIOLOGY - 1.01 Articolo in rivista -
Predicting the Pathogenicity of Human Protein Variants: Not Only a Matter of Residue Labeling Manfredi, Matteo; Vazzana, Gabriele; Babbi, Giulia; Bertolini, Elisa; Savojardo, Castrense; Marte...lli, Pier Luigi; Casadio, Rita 2025-01-01 - Humana Press Inc. 2.01 Capitolo / saggio in libro -
Alpha&ESMhFolds: A Web Server for Comparing AlphaFold2 and ESMFold Models of the Human Reference Proteome Manfredi, Matteo; Savojardo, Castrense; Iardukhin, Georgii; Salomoni, Davide; Costantini, Alessan...dro; Martelli, Pier Luigi; Casadio, Rita 2024-01-01 JOURNAL OF MOLECULAR BIOLOGY - 1.01 Articolo in rivista 1-s2.0-S0022283624001888-main(1).pdf; 1-s2.0-S0022283624001888-mmc1.docx
CoCoNat: A Deep Learning–Based Tool for the Prediction of Coiled-coil Domains in Protein Sequences Manfredi, Matteo; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita 2024-01-01 BIO-PROTOCOL - 1.01 Articolo in rivista Bio-protocol4935.pdf; 2305206_File S1.docx
E-pRSA: Embeddings Improve the Prediction of Residue Relative Solvent Accessibility in Protein Sequence Manfredi, Matteo; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita 2024-01-01 JOURNAL OF MOLECULAR BIOLOGY - 1.01 Articolo in rivista 1-s2.0-S0022283624000664-main.pdf; 1-s2.0-S0022283624000664-mmc1.docx; E-pRSA ManuscriptUnmarked-Complete.pdf
CoCoNat: a novel method based on deep learning for coiled-coil prediction Madeo G.; Savojardo C.; Manfredi M.; Martelli P.L.; Casadio R. 2023-01-01 BIOINFORMATICS - 1.01 Articolo in rivista btad495.pdf; btad495_supplementary_data.pdf
ISPRED-SEQ: Deep Neural Networks and Embeddings for Predicting Interaction Sites in Protein Sequences Manfredi M.; Savojardo C.; Martelli P.L.; Casadio R. 2023-01-01 JOURNAL OF MOLECULAR BIOLOGY - 1.01 Articolo in rivista 1-s2.0-S0022283623000190-main.pdf; 1-s2.0-S0022283623000190-mmc1(2).docx
E-SNPs&GO: embedding of protein sequence and function improves the annotation of human pathogenic variants Manfredi, Matteo; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita 2022-01-01 BIOINFORMATICS - 1.01 Articolo in rivista btac678.pdf
DeepREx-WS: A web server for characterising protein–solvent interaction starting from sequence Manfredi M.; Savojardo C.; Martelli P.L.; Casadio R. 2021-01-01 COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL - 1.01 Articolo in rivista 1-s2.0-S2001037021004384-main.pdf
Solvent Accessibility of Residues Undergoing Pathogenic Variations in Humans: From Protein Structures to Protein Sequences Savojardo, Castrense; Manfredi, Matteo; Martelli, Pier Luigi; Casadio, Rita 2021-01-01 FRONTIERS IN MOLECULAR BIOSCIENCES - 1.01 Articolo in rivista fmolb-07-626363.pdf