Interest in human mitochondrial genetic data is constantly increasing among both clinicians and researchers, due to the involvement of mitochondrial DNA (mtDNA) in a number of physiological and pathological processes. Thanks to new sequencing technologies and modern databases, the large amount of information on mtDNA variability may be exploited to gain insights into the relationship between mtDNA variants, phenotypes and diseases. To facilitate this process, we have developed the HmtVar resource, a variant-focused database that allows the exploration of a dataset of over 40 000 human mitochondrial variants. Mitochondrial variation data, initially gathered from the HmtDB platform, are integrated with in-house pathogenicity assessments based on various evaluation criteria and with a set of additional annotations from third-party resources. The result is a comprehensive collection of information of crucial importance for human mitochondrial variation studies and investigation of common and rare diseases in which the mitochondrion may be involved. HmtVar is accessible at https://www.hmtvar.uniba.it and data may be retrieved using either a web interface through the Query page or a state-of-the-art API for programmatic access.

Preste, R., Vitale, O., Clima, R., Gasparre, G., Attimonelli, M. (2019). HmtVar: a new resource for human mitochondrial variations and pathogenicity data. NUCLEIC ACIDS RESEARCH, 47(D1), D1202-D1210 [10.1093/nar/gky1024].

HmtVar: a new resource for human mitochondrial variations and pathogenicity data

Clima, Rosanna;Gasparre, Giuseppe;
2019

Abstract

Interest in human mitochondrial genetic data is constantly increasing among both clinicians and researchers, due to the involvement of mitochondrial DNA (mtDNA) in a number of physiological and pathological processes. Thanks to new sequencing technologies and modern databases, the large amount of information on mtDNA variability may be exploited to gain insights into the relationship between mtDNA variants, phenotypes and diseases. To facilitate this process, we have developed the HmtVar resource, a variant-focused database that allows the exploration of a dataset of over 40 000 human mitochondrial variants. Mitochondrial variation data, initially gathered from the HmtDB platform, are integrated with in-house pathogenicity assessments based on various evaluation criteria and with a set of additional annotations from third-party resources. The result is a comprehensive collection of information of crucial importance for human mitochondrial variation studies and investigation of common and rare diseases in which the mitochondrion may be involved. HmtVar is accessible at https://www.hmtvar.uniba.it and data may be retrieved using either a web interface through the Query page or a state-of-the-art API for programmatic access.
2019
Preste, R., Vitale, O., Clima, R., Gasparre, G., Attimonelli, M. (2019). HmtVar: a new resource for human mitochondrial variations and pathogenicity data. NUCLEIC ACIDS RESEARCH, 47(D1), D1202-D1210 [10.1093/nar/gky1024].
Preste, Roberto; Vitale, Ornella; Clima, Rosanna; Gasparre, Giuseppe; Attimonelli, Marcella
File in questo prodotto:
File Dimensione Formato  
NAR - RP.pdf

accesso aperto

Tipo: Versione (PDF) editoriale
Licenza: Licenza per Accesso Aperto. Creative Commons Attribuzione (CCBY)
Dimensione 1.05 MB
Formato Adobe PDF
1.05 MB Adobe PDF Visualizza/Apri
gky1024_supplemental_files.zip

accesso aperto

Tipo: File Supplementare
Licenza: Licenza per accesso libero gratuito
Dimensione 412.07 kB
Formato Zip File
412.07 kB Zip File Visualizza/Apri

I documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.

Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11585/655306
Citazioni
  • ???jsp.display-item.citation.pmc??? 38
  • Scopus 49
  • ???jsp.display-item.citation.isi??? 45
social impact