The next-generation sequencing era requires reliable, fast and efficient approaches for the accurate annotation of the ever-increasing number of biological sequences and their variations. Transfer of annotation upon similarity search is a standard approach. The procedure of all-against-all protein comparison is a preliminary step of different available methods that annotate sequences based on information already present in databases. Given the actual volume of sequences, methods are necessary to pre-process data to reduce the time of sequence comparison.

AlignBucket: a tool to speed up 'all-against-all' protein sequence alignments optimizing length constraints

PROFITI, GIUSEPPE;FARISELLI, PIERO;CASADIO, RITA
2015

Abstract

The next-generation sequencing era requires reliable, fast and efficient approaches for the accurate annotation of the ever-increasing number of biological sequences and their variations. Transfer of annotation upon similarity search is a standard approach. The procedure of all-against-all protein comparison is a preliminary step of different available methods that annotate sequences based on information already present in databases. Given the actual volume of sequences, methods are necessary to pre-process data to reduce the time of sequence comparison.
2015
Profiti, Giuseppe; Fariselli, Piero; Casadio, Rita
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11585/520167
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