MASETTI, MATTEO
MASETTI, MATTEO
FABIT - DIPARTIMENTO DI FARMACIA E BIOTECNOLOGIE
Docenti di ruolo di IIa fascia
PLUMED Tutorials: A collaborative, community-driven learning ecosystem
2025 Tribello, Gareth A.; Bonomi, Massimiliano; Bussi, Giovanni; Camilloni, Carlo; Armstrong, Blake I.; Arsiccio, Andrea; Aureli, Simone; Ballabio, Federico; Bernetti, Mattia; Bonati, Luigi; Brookes, Samuel G. H.; Brotzakis, Z. Faidon; Capelli, Riccardo; Ceriotti, Michele; Chan, Kam-Tung; Cossio, Pilar; Dasetty, Siva; Donadio, Davide; Ensing, Bernd; Ferguson, Andrew L.; Fraux, Guillaume; Gale, Julian D.; Gervasio, Francesco Luigi; Giorgino, Toni; Herringer, Nicholas S. M.; Hocky, Glen M.; Hoff, Samuel E.; Invernizzi, Michele; Languin-Cattoën, Olivier; Leone, Vanessa; Limongelli, Vittorio; Lopez-Acevedo, Olga; Marinelli, Fabrizio; Febrer Martinez, Pedro; Masetti, Matteo; Mehdi, Shams; Michaelides, Angelos; Murtada, Mhd Hussein; Parrinello, Michele; Piaggi, Pablo M.; Pietropaolo, Adriana; Pietrucci, Fabio; Pipolo, Silvio; Pritchard, Claire; Raiteri, Paolo; Raniolo, Stefano; Rapetti, Daniele; Rizzi, Valerio; Rydzewski, Jakub; Salvalaglio, Matteo; Schran, Christoph; Seal, Aniruddha; Shayesteh Zadeh, Armin; Silva, Tomás F. D.; Spiwok, Vojtěch; Stirnemann, Guillaume; Sucerquia, Daniel; Tiwary, Pratyush; Valsson, Omar; Vendruscolo, Michele; Voth, Gregory A.; White, Andrew D.; Wu, Jiangbo
The mechanistic understanding of the BRCA2-RAD51 interaction: an integrated structural biophysics study
2025 Rinaldi, F.; Bernetti, M.; Bresciani, V.; Veronesi, M.; Masetti, M.; Girotto, S.; Cavalli, A.
The mechanistic understanding of the BRCA2-RAD51 interaction: an integrated structural biophysics study
2025 Rinaldi, F.; Bernetti, M.; Bresciani, V.; Veronesi, M.; Masetti, M.; Girotto, S.; Cavalli, A.
Combining computational and experimental methods to characterize the RAD51-BRC repeats interaction
2024 Bresciani V., Rinaldi F., Bernetti M., Masetti M.
Elucidating the RAD51-BRC repeats interaction by integrating computational and experimental approaches
2024 Bresciani V., Rinaldi F., Bernetti M., Masetti M.
Fragment Merging, Growing, and Linking Identify New Trypanothione Reductase Inhibitors for Leishmaniasis
2024 Exertier, Cécile; Salerno, Alessandra; Antonelli, Lorenzo; Fiorillo, Annarita; Ocello, Riccardo; Seghetti, Francesca; Caciolla, Jessica; Uliassi, Elisa; Masetti, Matteo; Fiorentino, Eleonora; Orsini, Stefania; Di Muccio, Trentina; Ilari, Andrea; Bolognesi, Maria Laura
Gating residues govern ligand unbinding kinetics from the buried cavity in HIF‐2α PAS‐B
2024 Silvestrini, Marion L.; Solazzo, Riccardo; Boral, Soumendu; Cocco, Melanie J.; Closson, Joseph D.; Masetti, Matteo; Gardner, Kevin H.; Chong, Lillian T.
Probing allosteric communication with combined molecular dynamics simulations and network analysis
2024 Bernetti, Mattia; Bosio, Stefano; Bresciani, Veronica; Falchi, Federico; Masetti, Matteo
Similarities and Differences in Ligand Binding to Protein and RNA Targets: The Case of Riboflavin
2024 Bosio, Stefano; Bernetti, Mattia; Rocchia, Walter; Masetti, Matteo
Integrated Approach Including Docking, MD Simulations, and Network Analysis Highlights the Action Mechanism of the Cardiac hERG Activator RPR260243
2023 Costa, Flavio; Ocello, Riccardo; Guardiani, Carlo; Giacomello, Alberto; Masetti, Matteo
Potent Antioxidant and Anti-Tyrosinase Activity of Butein and Homobutein Probed by Molecular Kinetic and Mechanistic Studies †
2023 Pan W.; Giovanardi I.; Sagynova T.; Cariola A.; Bresciani V.; Masetti M.; Valgimigli L.
Computational drug discovery under RNA times
2022 Bernetti M.; Aguti R.; Bosio S.; Recanatini M.; Masetti M.; Cavalli A.
From Acid Activation Mechanisms of Proton Conduction to Design of Inhibitors of the M2 Proton Channel of Influenza A Virus
2022 Aledavood, Elnaz; Selmi, Beatrice; Estarellas, Carolina; Masetti, Matteo; Luque, F. Javier
Recent Advancements in Modeling and Simulations of Ion Channels
2022 Simone Furini; Luca Maragliano; Matteo Masetti
Ion Conduction Mechanism as a Fingerprint of Potassium Channels
2021 Domene, C.; Ocello, R.; Masetti, M.; Furini, S.
Probing the transport of Ni(II) ions through the internal tunnels of the Helicobacter pylori UreDFG multimeric protein complex
2021 Masetti, Matteo; Bertazzo, Martina; Recanatini, Maurizio; Ciurli, Stefano; Musiani, Francesco
Targeting the JAK/STAT Pathway: A Combined Ligand- And Target-Based Approach
2021 Galvez-Llompart M.; Ocello R.; Rullo L.; Stamatakos S.; Alessandrini I.; Zanni R.; Tunon I.; Cavalli A.; Candeletti S.; Masetti M.; Romualdi P.; Recanatini M.
Conduction and Gating Properties of the TRAAK Channel from Molecular Dynamics Simulations with Different Force Fields
2020 Ocello R.; Furini S.; Lugli F.; Recanatini M.; Domene C.; Masetti M.
Data-Driven Molecular Dynamics: A Multifaceted Challenge
2020 Bernetti, Mattia; Bertazzo, Martina; Masetti, Matteo
Enhanced Molecular Dynamics Simulations of Intrinsically Disordered Proteins
2020 Masetti, Matteo; Bernetti, Mattia; Cavalli, Andrea
| Titolo | Autore(i) | Anno | Periodico | Editore | Tipo | File |
|---|---|---|---|---|---|---|
| PLUMED Tutorials: A collaborative, community-driven learning ecosystem | Tribello, Gareth A.; Bonomi, Massimiliano; Bussi, Giovanni; Camilloni, Carlo; Armstrong, Blake I....; Arsiccio, Andrea; Aureli, Simone; Ballabio, Federico; Bernetti, Mattia; Bonati, Luigi; Brookes, Samuel G. H.; Brotzakis, Z. Faidon; Capelli, Riccardo; Ceriotti, Michele; Chan, Kam-Tung; Cossio, Pilar; Dasetty, Siva; Donadio, Davide; Ensing, Bernd; Ferguson, Andrew L.; Fraux, Guillaume; Gale, Julian D.; Gervasio, Francesco Luigi; Giorgino, Toni; Herringer, Nicholas S. M.; Hocky, Glen M.; Hoff, Samuel E.; Invernizzi, Michele; Languin-Cattoën, Olivier; Leone, Vanessa; Limongelli, Vittorio; Lopez-Acevedo, Olga; Marinelli, Fabrizio; Febrer Martinez, Pedro; Masetti, Matteo; Mehdi, Shams; Michaelides, Angelos; Murtada, Mhd Hussein; Parrinello, Michele; Piaggi, Pablo M.; Pietropaolo, Adriana; Pietrucci, Fabio; Pipolo, Silvio; Pritchard, Claire; Raiteri, Paolo; Raniolo, Stefano; Rapetti, Daniele; Rizzi, Valerio; Rydzewski, Jakub; Salvalaglio, Matteo; Schran, Christoph; Seal, Aniruddha; Shayesteh Zadeh, Armin; Silva, Tomás F. D.; Spiwok, Vojtěch; Stirnemann, Guillaume; Sucerquia, Daniel; Tiwary, Pratyush; Valsson, Omar; Vendruscolo, Michele; Voth, Gregory A.; White, Andrew D.; Wu, Jiangbo | 2025-01-01 | THE JOURNAL OF CHEMICAL PHYSICS | - | 1.01 Articolo in rivista | - |
| The mechanistic understanding of the BRCA2-RAD51 interaction: an integrated structural biophysics study | Rinaldi, F.; Bernetti, M.; Bresciani, V.; Veronesi, M.; Masetti, M.; Girotto, S.; Cavalli, A. | 2025-01-01 | - | - | 4.03 Poster | - |
| The mechanistic understanding of the BRCA2-RAD51 interaction: an integrated structural biophysics study | Rinaldi, F.; Bernetti, M.; Bresciani, V.; Veronesi, M.; Masetti, M.; Girotto, S.; Cavalli, A. | 2025-01-01 | - | - | 4.03 Poster | - |
| Combining computational and experimental methods to characterize the RAD51-BRC repeats interaction | Bresciani V., Rinaldi F., Bernetti M., Masetti M. | 2024-01-01 | - | - | 4.01 Contributo in Atti di convegno | - |
| Elucidating the RAD51-BRC repeats interaction by integrating computational and experimental approaches | Bresciani V., Rinaldi F., Bernetti M., Masetti M. | 2024-01-01 | - | - | 4.03 Poster | - |
| Fragment Merging, Growing, and Linking Identify New Trypanothione Reductase Inhibitors for Leishmaniasis | Exertier, Cécile; Salerno, Alessandra; Antonelli, Lorenzo; Fiorillo, Annarita; Ocello, Riccardo; ...Seghetti, Francesca; Caciolla, Jessica; Uliassi, Elisa; Masetti, Matteo; Fiorentino, Eleonora; Orsini, Stefania; Di Muccio, Trentina; Ilari, Andrea; Bolognesi, Maria Laura | 2024-01-01 | JOURNAL OF MEDICINAL CHEMISTRY | - | 1.01 Articolo in rivista | exertier-et-al-2024-fragment-merging-growing-and-linking-identify-new-trypanothione-reductase-inhibitors-for.pdf; jm3c01439_si_001.pdf |
| Gating residues govern ligand unbinding kinetics from the buried cavity in HIF‐2α PAS‐B | Silvestrini, Marion L.; Solazzo, Riccardo; Boral, Soumendu; Cocco, Melanie J.; Closson, Joseph D....; Masetti, Matteo; Gardner, Kevin H.; Chong, Lillian T. | 2024-01-01 | PROTEIN SCIENCE | - | 1.01 Articolo in rivista | 2024_Silvestrini_Solazzo - Gating residues govern ligand unbinding kinetics from the buried cavity in HIF‐2 _OPEN_ACCESS.zip |
| Probing allosteric communication with combined molecular dynamics simulations and network analysis | Bernetti, Mattia; Bosio, Stefano; Bresciani, Veronica; Falchi, Federico; Masetti, Matteo | 2024-01-01 | CURRENT OPINION IN STRUCTURAL BIOLOGY | - | 1.01 Articolo in rivista | 2024_Bernetti_OPEN_ACCESS.pdf |
| Similarities and Differences in Ligand Binding to Protein and RNA Targets: The Case of Riboflavin | Bosio, Stefano; Bernetti, Mattia; Rocchia, Walter; Masetti, Matteo | 2024-01-01 | JOURNAL OF CHEMICAL INFORMATION AND MODELING | - | 1.01 Articolo in rivista | - |
| Integrated Approach Including Docking, MD Simulations, and Network Analysis Highlights the Action Mechanism of the Cardiac hERG Activator RPR260243 | Costa, Flavio; Ocello, Riccardo; Guardiani, Carlo; Giacomello, Alberto; Masetti, Matteo | 2023-01-01 | JOURNAL OF CHEMICAL INFORMATION AND MODELING | - | 1.01 Articolo in rivista | 2023_Costa_Ocello_OPEN_ACCESS.pdf |
| Potent Antioxidant and Anti-Tyrosinase Activity of Butein and Homobutein Probed by Molecular Kinetic and Mechanistic Studies † | Pan W.; Giovanardi I.; Sagynova T.; Cariola A.; Bresciani V.; Masetti M.; Valgimigli L. | 2023-01-01 | ANTIOXIDANTS | - | 1.01 Articolo in rivista | antioxidants-12-01763-v2 (Valgimigli 2023).pdf |
| Computational drug discovery under RNA times | Bernetti M.; Aguti R.; Bosio S.; Recanatini M.; Masetti M.; Cavalli A. | 2022-01-01 | QRB DISCOVERY | - | 1.01 Articolo in rivista | 2022_Bernetti.pdf |
| From Acid Activation Mechanisms of Proton Conduction to Design of Inhibitors of the M2 Proton Channel of Influenza A Virus | Aledavood, Elnaz; Selmi, Beatrice; Estarellas, Carolina; Masetti, Matteo; Luque, F. Javier | 2022-01-01 | FRONTIERS IN MOLECULAR BIOSCIENCES | - | 1.01 Articolo in rivista | 2022_Aledavood.pdf |
| Recent Advancements in Modeling and Simulations of Ion Channels | Simone Furini; Luca Maragliano; Matteo Masetti | 2022-01-01 | FRONTIERS IN MOLECULAR BIOSCIENCES | - | 1.04 Replica / breve intervento (e simili) | 2022_Furini_Maragliano_Masetti.pdf |
| Ion Conduction Mechanism as a Fingerprint of Potassium Channels | Domene, C.; Ocello, R.; Masetti, M.; Furini, S. | 2021-01-01 | JOURNAL OF THE AMERICAN CHEMICAL SOCIETY | - | 1.01 Articolo in rivista | Domene et al.pdf; supplementary.pdf |
| Probing the transport of Ni(II) ions through the internal tunnels of the Helicobacter pylori UreDFG multimeric protein complex | Masetti, Matteo; Bertazzo, Martina; Recanatini, Maurizio; Ciurli, Stefano; Musiani, Francesco | 2021-01-01 | JOURNAL OF INORGANIC BIOCHEMISTRY | - | 1.01 Articolo in rivista | - |
| Targeting the JAK/STAT Pathway: A Combined Ligand- And Target-Based Approach | Galvez-Llompart M.; Ocello R.; Rullo L.; Stamatakos S.; Alessandrini I.; Zanni R.; Tunon I.; Cava...lli A.; Candeletti S.; Masetti M.; Romualdi P.; Recanatini M. | 2021-01-01 | JOURNAL OF CHEMICAL INFORMATION AND MODELING | - | 1.01 Articolo in rivista | acs.jcim.2021_1.pdf |
| Conduction and Gating Properties of the TRAAK Channel from Molecular Dynamics Simulations with Different Force Fields | Ocello R.; Furini S.; Lugli F.; Recanatini M.; Domene C.; Masetti M. | 2020-01-01 | JOURNAL OF CHEMICAL INFORMATION AND MODELING | - | 1.01 Articolo in rivista | 2020_ocello_OPEN-ACCESS.pdf |
| Data-Driven Molecular Dynamics: A Multifaceted Challenge | Bernetti, Mattia; Bertazzo, Martina; Masetti, Matteo | 2020-01-01 | PHARMACEUTICALS | - | 1.01 Articolo in rivista | 2020_bernetti.pdf |
| Enhanced Molecular Dynamics Simulations of Intrinsically Disordered Proteins | Masetti, Matteo; Bernetti, Mattia; Cavalli, Andrea | 2020-01-01 | - | Humana | 2.01 Capitolo / saggio in libro | - |