Genomics is opening many interesting practical and theoretical computational problems; one of them is the search for a collection of genomic regions at given distances from each other, i.e., a pattern of genomic regions. We designed and implemented an optimized pattern-search algorithm able to find efficiently, within a large set of genomic data, genomic region sequences which are similar to a given pattern and present its applicability to the problem of enhancer detection.
P. Montanari, I. Bartolini, P, C., M. Patella, S. Ceri, M. Masseroli (2016). Looking for Similar Patterns in Genomic Sequences.. Edizioni Matematicamente.it.
Looking for Similar Patterns in Genomic Sequences.
MONTANARI, PIERO;BARTOLINI, ILARIA;CIACCIA, PAOLO;PATELLA, MARCO;
2016
Abstract
Genomics is opening many interesting practical and theoretical computational problems; one of them is the search for a collection of genomic regions at given distances from each other, i.e., a pattern of genomic regions. We designed and implemented an optimized pattern-search algorithm able to find efficiently, within a large set of genomic data, genomic region sequences which are similar to a given pattern and present its applicability to the problem of enhancer detection.File in questo prodotto:
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