Genomics is opening many interesting practical and theoretical computational problems; one of them is the search for a collection of genomic regions at given distances from each other, i.e., a pattern of genomic regions. We designed and implemented an optimized pattern-search algorithm able to find efficiently, within a large set of genomic data, genomic region sequences which are similar to a given pattern and present its applicability to the problem of enhancer detection.

P. Montanari, I. Bartolini, P, C., M. Patella, S. Ceri, M. Masseroli (2016). Looking for Similar Patterns in Genomic Sequences.. Edizioni Matematicamente.it.

Looking for Similar Patterns in Genomic Sequences.

MONTANARI, PIERO;BARTOLINI, ILARIA;CIACCIA, PAOLO;PATELLA, MARCO;
2016

Abstract

Genomics is opening many interesting practical and theoretical computational problems; one of them is the search for a collection of genomic regions at given distances from each other, i.e., a pattern of genomic regions. We designed and implemented an optimized pattern-search algorithm able to find efficiently, within a large set of genomic data, genomic region sequences which are similar to a given pattern and present its applicability to the problem of enhancer detection.
2016
Proceedings of the 24th Italian Symposium on Advanced Database Systems.
110
117
P. Montanari, I. Bartolini, P, C., M. Patella, S. Ceri, M. Masseroli (2016). Looking for Similar Patterns in Genomic Sequences.. Edizioni Matematicamente.it.
P. Montanari; I. Bartolini; P, Ciaccia; M. Patella; S. Ceri; M. Masseroli
File in questo prodotto:
Eventuali allegati, non sono esposti

I documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.

Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11585/563528
 Attenzione

Attenzione! I dati visualizzati non sono stati sottoposti a validazione da parte dell'ateneo

Citazioni
  • ???jsp.display-item.citation.pmc??? ND
  • Scopus 1
  • ???jsp.display-item.citation.isi??? ND
social impact