Summary: UniGene Tabulator 1.0 provides a solution for full parsing of UniGene flat file format; it implements a structured graphical representation of each data field present in UniGene following import into a common database managing system usable in a personal computer. This database includes related tables for sequence, protein similarity, sequence-tagged site (STS) and transcript map interval (TXMAP) data, plus a summary table where each record represents a UniGene cluster. UniGene Tabulator enables full local management of UniGene data, allowing parsing, querying, indexing, retrieving, exporting and analysis of UniGene data in a relational database form, usable on Macintosh (OS X 10.3.9 or later) and Windows (2000, with service pack 4, XP, with service pack 2 or later) operating systems-based computers. © 2006 Oxford University Press.
Lenzi L, Frabetti F, Facchin F, Casadei R, Vitale L, Canaider S, et al. (2006). UniGene Tabulator: a full parser for the UniGene format. BIOINFORMATICS, 22(20), 2570-2571 [10.1093/bioinformatics/btl425].
UniGene Tabulator: a full parser for the UniGene format
LENZI, LUCA;FRABETTI, FLAVIA;FACCHIN, FEDERICA;CASADEI, RAFFAELLA;VITALE, LORENZA;CANAIDER, SILVIA;CARINCI, PAOLO;ZANNOTTI, MARIA;STRIPPOLI, PIERLUIGI
2006
Abstract
Summary: UniGene Tabulator 1.0 provides a solution for full parsing of UniGene flat file format; it implements a structured graphical representation of each data field present in UniGene following import into a common database managing system usable in a personal computer. This database includes related tables for sequence, protein similarity, sequence-tagged site (STS) and transcript map interval (TXMAP) data, plus a summary table where each record represents a UniGene cluster. UniGene Tabulator enables full local management of UniGene data, allowing parsing, querying, indexing, retrieving, exporting and analysis of UniGene data in a relational database form, usable on Macintosh (OS X 10.3.9 or later) and Windows (2000, with service pack 4, XP, with service pack 2 or later) operating systems-based computers. © 2006 Oxford University Press.I documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.
