PACI, EMANUELE
PACI, EMANUELE
DIPARTIMENTO DI FISICA E ASTRONOMIA "AUGUSTO RIGHI"
Docenti di ruolo di IIa fascia
Structural constraints of pyocin S2 import through the ferripyoverdine receptor FpvAI
2024 Jonathan D Goult; Daniel C L Van; Yasmin V Taylor; Patrick G Inns; Renata Kaminska; Martin Vesely; Colin Kleanthous; Emanuele Paci
Collagen-like Motifs of SasG: A Novel Fold for Protein Mechanical Strength
2023 Bruce A.J.E.; Paci E.; Brockwell D.J.
Powerful Avidity with a Limited Valency for Virus-Attachment Blockers on DC-SIGN: Combining Chelation and Statistical Rebinding with Structural Plasticity of the Receptor
2023 Porkolab V.; Lepsik M.; Ordanini S.; St John A.; Le Roy A.; Thepaut M.; Paci E.; Ebel C.; Bernardi A.; Fieschi F.
ADOPT: intrinsic protein disorder prediction through deep bidirectional transformers
2022 Istvan Redl; Carlo Fisicaro; Oliver Dutton; Falk Hoffmann; Louie Henderson; Benjamin M.J. Owens; Matthew Heberling; Emanuele Paci; Kamil Tamiola
High-Resolution Hydrogen-Deuterium Protection Factors from Sparse Mass Spectrometry Data Validated by Nuclear Magnetic Resonance Measurements
2022 Stofella M.; Skinner S.P.; Sobott F.; Houwing-Duistermaat J.; Paci E.
Computational methods to predict the mutational landscape of the spike protein
2021 Paci E.; Ross J.F.
Partial Opening of Cytochrome P450cam (CYP101A1) Is Driven by Allostery and Putidaredoxin Binding
2021 Skinner S.P.; Follmer A.H.; Ubbink M.; Poulos T.L.; Houwing-Duistermaat J.J.; Paci E.
Periscope Proteins are variable-length regulators of bacterial cell surface interactions
2021 Whelan F.; Lafita A.; Gilburt J.; Degut C.; Griffiths S.C.; Jenkins H.T.; St John A.N.; Paci E.; Moir J.W.B.; Plevin M.J.; Baumann C.G.; Bateman A.; Potts J.R.
Protein mechanics probed using simple molecular models
2020 Batchelor M.; Papachristos K.; Stofella M.; Yew Z.T.; Paci E.
Activation of PKA via asymmetric allosteric coupling of structurally conserved cyclic nucleotide binding domains
2019 Hao Y.; England J.P.; Bellucci L.; Paci E.; Hodges H.C.; Taylor S.S.; Maillard R.A.
Allostery in Its Many Disguises: From Theory to Applications
2019 Wodak, Shoshana J; Paci, Emanuele; Dokholyan, Nikolay V; Berezovsky, Igor N; Horovitz, Amnon; Li, Jing; Hilser, Vincent J; Bahar, Ivet; Karanicolas, John; Stock, Gerhard; Hamm, Peter; Stote, Roland H; Eberhardt, Jerome; Chebaro, Yassmine; Dejaegere, Annick; Cecchini, Marco; Changeux, Jean-Pierre; Bolhuis, Peter G; Vreede, Jocelyne; Faccioli, Pietro; Orioli, Simone; Ravasio, Riccardo; Yan, Le; Brito, Carolina; Wyart, Matthieu; Gkeka, Paraskevi; Rivalta, Ivan; Palermo, Giulia; McCammon, J Andrew; Panecka-Hofman, Joanna; Wade, Rebecca C; Di Pizio, Antonella; Niv, Masha Y; Nussinov, Ruth; Tsai, Chung-Jung; Jang, Hyunbum; Padhorny, Dzmitry; Kozakov, Dima; McLeish, Tom
Computational Modeling of Designed Ankyrin Repeat Protein Complexes with Their Targets
2019 Radom F.; Paci E.; Pluckthun A.
Defining the remarkable structural malleability of a bacterial surface protein Rib domain implicated in infection
2019 Whelan F.; Lafita A.; Griffiths S.C.; Cooper R.E.M.; Whittingham J.L.; Turkenburg J.P.; Manfield I.W.; St John A.N.; Paci E.; Bateman A.; Potts J.R.
Directed Assembly of Homopentameric Cholera Toxin B-Subunit Proteins into Higher-Order Structures Using Coiled-Coil Appendages
2019 Ross J.F.; Wildsmith G.C.; Johnson M.; Hurdiss D.L.; Hollingsworth K.; Thompson R.F.; Mosayebi M.; Trinh C.H.; Paci E.; Pearson A.R.; Webb M.E.; Turnbull W.B.
Dynamic ion pair behavior stabilizes single alpha-helices in proteins
2019 Batchelor M.; Wolny M.; Baker E.G.; Paci E.; Kalverda A.P.; Peckham M.
Estimating Constraints for Protection Factors from HDX-MS Data
2019 Skinner S.P.; Radou G.; Tuma R.; Houwing-Duistermaat J.J.; Paci E.
Induction of rare conformation of oligosaccharide by binding to calcium-dependent bacterial lectin: X-ray crystallography and modelling study
2019 Lepsik M.; Sommer R.; Kuhaudomlarp S.; Lelimousin M.; Paci E.; Varrot A.; Titz A.; Imberty A.
A mechanism for agonist activation of the glucagon-like Peptide-1 (GLP-1) receptor through modelling & molecular dynamics
2018 Santiago C.G.; Paci E.; Donnelly D.
Assessment of ab initio models of protein complexes by molecular dynamics
2018 Radom F.; Pluckthun A.; Paci E.
Helical Polyampholyte Sequences Have Unique Thermodynamic Properties
2018 Batchelor M.; Paci E.
| Titolo | Autore(i) | Anno | Periodico | Editore | Tipo | File |
|---|---|---|---|---|---|---|
| Structural constraints of pyocin S2 import through the ferripyoverdine receptor FpvAI | Jonathan D Goult; Daniel C L Van; Yasmin V Taylor; Patrick G Inns; Renata Kaminska; Martin Vesely...; Colin Kleanthous; Emanuele Paci | 2024-01-01 | PNAS NEXUS | - | 1.01 Articolo in rivista | - |
| Collagen-like Motifs of SasG: A Novel Fold for Protein Mechanical Strength | Bruce A.J.E.; Paci E.; Brockwell D.J. | 2023-01-01 | JOURNAL OF MOLECULAR BIOLOGY | - | 1.01 Articolo in rivista | - |
| Powerful Avidity with a Limited Valency for Virus-Attachment Blockers on DC-SIGN: Combining Chelation and Statistical Rebinding with Structural Plasticity of the Receptor | Porkolab V.; Lepsik M.; Ordanini S.; St John A.; Le Roy A.; Thepaut M.; Paci E.; Ebel C.; Bernard...i A.; Fieschi F. | 2023-01-01 | ACS CENTRAL SCIENCE | - | 1.01 Articolo in rivista | - |
| ADOPT: intrinsic protein disorder prediction through deep bidirectional transformers | Istvan Redl; Carlo Fisicaro; Oliver Dutton; Falk Hoffmann; Louie Henderson; Benjamin M.J. Owens; ...Matthew Heberling; Emanuele Paci; Kamil Tamiola | 2022-01-01 | NAR GENOMICS AND BIOINFORMATICS | - | 1.01 Articolo in rivista | - |
| High-Resolution Hydrogen-Deuterium Protection Factors from Sparse Mass Spectrometry Data Validated by Nuclear Magnetic Resonance Measurements | Stofella M.; Skinner S.P.; Sobott F.; Houwing-Duistermaat J.; Paci E. | 2022-01-01 | JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY | - | 1.01 Articolo in rivista | stofella22.pdf |
| Computational methods to predict the mutational landscape of the spike protein | Paci E.; Ross J.F. | 2021-01-01 | BIOPHYSICAL JOURNAL | - | 1.01 Articolo in rivista | - |
| Partial Opening of Cytochrome P450cam (CYP101A1) Is Driven by Allostery and Putidaredoxin Binding | Skinner S.P.; Follmer A.H.; Ubbink M.; Poulos T.L.; Houwing-Duistermaat J.J.; Paci E. | 2021-01-01 | BIOCHEMISTRY | - | 1.01 Articolo in rivista | acs.biochem.1c00406.pdf |
| Periscope Proteins are variable-length regulators of bacterial cell surface interactions | Whelan F.; Lafita A.; Gilburt J.; Degut C.; Griffiths S.C.; Jenkins H.T.; St John A.N.; Paci E.; ...Moir J.W.B.; Plevin M.J.; Baumann C.G.; Bateman A.; Potts J.R. | 2021-01-01 | PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA | - | 1.01 Articolo in rivista | pnas.2101349118.pdf; pnas.2101349118.sapp_compressed.pdf |
| Protein mechanics probed using simple molecular models | Batchelor M.; Papachristos K.; Stofella M.; Yew Z.T.; Paci E. | 2020-01-01 | BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS | - | 1.01 Articolo in rivista | bba-jcs_revised-unmarked.pdf |
| Activation of PKA via asymmetric allosteric coupling of structurally conserved cyclic nucleotide binding domains | Hao Y.; England J.P.; Bellucci L.; Paci E.; Hodges H.C.; Taylor S.S.; Maillard R.A. | 2019-01-01 | NATURE COMMUNICATIONS | - | 1.01 Articolo in rivista | hao19.pdf |
| Allostery in Its Many Disguises: From Theory to Applications | Wodak, Shoshana J; Paci, Emanuele; Dokholyan, Nikolay V; Berezovsky, Igor N; Horovitz, Amnon; Li,... Jing; Hilser, Vincent J; Bahar, Ivet; Karanicolas, John; Stock, Gerhard; Hamm, Peter; Stote, Roland H; Eberhardt, Jerome; Chebaro, Yassmine; Dejaegere, Annick; Cecchini, Marco; Changeux, Jean-Pierre; Bolhuis, Peter G; Vreede, Jocelyne; Faccioli, Pietro; Orioli, Simone; Ravasio, Riccardo; Yan, Le; Brito, Carolina; Wyart, Matthieu; Gkeka, Paraskevi; Rivalta, Ivan; Palermo, Giulia; McCammon, J Andrew; Panecka-Hofman, Joanna; Wade, Rebecca C; Di Pizio, Antonella; Niv, Masha Y; Nussinov, Ruth; Tsai, Chung-Jung; Jang, Hyunbum; Padhorny, Dzmitry; Kozakov, Dima; McLeish, Tom | 2019-01-01 | STRUCTURE | - | 1.01 Articolo in rivista | - |
| Computational Modeling of Designed Ankyrin Repeat Protein Complexes with Their Targets | Radom F.; Paci E.; Pluckthun A. | 2019-01-01 | JOURNAL OF MOLECULAR BIOLOGY | - | 1.01 Articolo in rivista | - |
| Defining the remarkable structural malleability of a bacterial surface protein Rib domain implicated in infection | Whelan F.; Lafita A.; Griffiths S.C.; Cooper R.E.M.; Whittingham J.L.; Turkenburg J.P.; Manfield ...I.W.; St John A.N.; Paci E.; Bateman A.; Potts J.R. | 2019-01-01 | PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA | - | 1.01 Articolo in rivista | - |
| Directed Assembly of Homopentameric Cholera Toxin B-Subunit Proteins into Higher-Order Structures Using Coiled-Coil Appendages | Ross J.F.; Wildsmith G.C.; Johnson M.; Hurdiss D.L.; Hollingsworth K.; Thompson R.F.; Mosayebi M....; Trinh C.H.; Paci E.; Pearson A.R.; Webb M.E.; Turnbull W.B. | 2019-01-01 | JOURNAL OF THE AMERICAN CHEMICAL SOCIETY | - | 1.01 Articolo in rivista | - |
| Dynamic ion pair behavior stabilizes single alpha-helices in proteins | Batchelor M.; Wolny M.; Baker E.G.; Paci E.; Kalverda A.P.; Peckham M. | 2019-01-01 | THE JOURNAL OF BIOLOGICAL CHEMISTRY | - | 1.01 Articolo in rivista | batchelor19.pdf |
| Estimating Constraints for Protection Factors from HDX-MS Data | Skinner S.P.; Radou G.; Tuma R.; Houwing-Duistermaat J.J.; Paci E. | 2019-01-01 | BIOPHYSICAL JOURNAL | - | 1.01 Articolo in rivista | - |
| Induction of rare conformation of oligosaccharide by binding to calcium-dependent bacterial lectin: X-ray crystallography and modelling study | Lepsik M.; Sommer R.; Kuhaudomlarp S.; Lelimousin M.; Paci E.; Varrot A.; Titz A.; Imberty A. | 2019-01-01 | EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY | - | 1.01 Articolo in rivista | - |
| A mechanism for agonist activation of the glucagon-like Peptide-1 (GLP-1) receptor through modelling & molecular dynamics | Santiago C.G.; Paci E.; Donnelly D. | 2018-01-01 | BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS | - | 1.01 Articolo in rivista | - |
| Assessment of ab initio models of protein complexes by molecular dynamics | Radom F.; Pluckthun A.; Paci E. | 2018-01-01 | PLOS COMPUTATIONAL BIOLOGY | - | 1.01 Articolo in rivista | radom18.pdf |
| Helical Polyampholyte Sequences Have Unique Thermodynamic Properties | Batchelor M.; Paci E. | 2018-01-01 | JOURNAL OF PHYSICAL CHEMISTRY. B, CONDENSED MATTER, MATERIALS, SURFACES, INTERFACES & BIOPHYSICAL | - | 1.01 Articolo in rivista | - |