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SAVOJARDO, CASTRENSE

SAVOJARDO, CASTRENSE  

FABIT - DIPARTIMENTO DI FARMACIA E BIOTECNOLOGIE  

Docenti di ruolo di IIa fascia  

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Risultati 1 - 20 di 104 (tempo di esecuzione: 0.053 secondi).
Titolo Autore(i) Anno Periodico Editore Tipo File
CoCoNat: A Deep Learning–Based Tool for the Prediction of Coiled-coil Domains in Protein Sequences Manfredi, Matteo; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita 9999-01-01 BIO-PROTOCOL - 1.01 Articolo in rivista -
A multidisciplinary approach to describe population structure of Solea solea in the Mediterranean Sea Corti, Rachele; Piazza, Elisabetta; Armelloni, ENRICO NICOLA; Ferrari, Alice; Geffen, Audrey J.; ... espandiMaes, Gregory E.; Masnadi, Francesco; Savojardo, Castrense; Scarcella, Giuseppe; Stagioni, Marco; Tinti, Fausto; Zemella, Alex; Cariani, Alessia 2024-01-01 FRONTIERS IN MARINE SCIENCE - 1.01 Articolo in rivista fmars-11-1372743.pdf; Data Sheet 1.pdf
Alpha&ESMhFolds: A Web Server for Comparing AlphaFold2 and ESMFold Models of the Human Reference Proteome Manfredi, Matteo; Savojardo, Castrense; Iardukhin, Georgii; Salomoni, Davide; Costantini, Alessan... espandidro; Martelli, Pier Luigi; Casadio, Rita 2024-01-01 JOURNAL OF MOLECULAR BIOLOGY - 1.01 Articolo in rivista 1-s2.0-S0022283624001888-main(1).pdf; 1-s2.0-S0022283624001888-mmc1.docx
Assessing predictions on fitness effects of missense variants in HMBS in CAGI6 Zhang, J.; Kinch, L.; Katsonis, P.; Lichtarge, O.; Jagota, M.; Song, Y. S.; Sun, Y.; Shen, Y.; Ku... espandiru, N.; Dereli, O.; Adebali, O.; Alladin, M. A.; Pal, D.; Capriotti, E.; Turina, M. P.; Savojardo, C.; Martelli, P. L.; Babbi, G.; Casadio, R.; Pucci, F.; Rooman, M.; Cia, G.; Tsishyn, M.; Strokach, A.; Hu, Z.; van Loggerenberg, W.; Roth, F. P.; Radivojac, P.; Brenner, S. E.; Cong, Q.; Grishin, N. V. 2024-01-01 HUMAN GENETICS - 1.01 Articolo in rivista Assessing predictions on fitness effects of missense variants in HMBS in CAGI6_accepted (3)_compressed.pdf
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods Null, Null; Jain, Shantanu; Bakolitsa, Constantina; Brenner, Steven E.; Radivojac, Predrag; Moult... espandi, John; Repo, Susanna; Hoskins, Roger A.; Andreoletti, Gaia; Barsky, Daniel; Chellapan, Ajithavalli; Chu, Hoyin; Dabbiru, Navya; Kollipara, Naveen K.; Ly, Melissa; Neumann, Andrew J.; Pal, Lipika R.; Odell, Eric; Pandey, Gaurav; Peters-Petrulewicz, Robin C.; Srinivasan, Rajgopal; Yee, Stephen F.; Yeleswarapu, Sri Jyothsna; Zuhl, Maya; Adebali, Ogun; Patra, Ayoti; Beer, Michael A.; Hosur, Raghavendra; Peng, Jian; Bernard, Brady M.; Berry, Michael; Dong, Shengcheng; Boyle, Alan P.; Adhikari, Aashish; Chen, Jingqi; Hu, Zhiqiang; Wang, Robert; Wang, Yaqiong; Miller, Maximilian; Wang, Yanran; Bromberg, Yana; Turina, Paola; Capriotti, Emidio; Han, James J.; Ozturk, Kivilcim; Carter, Hannah; Babbi, Giulia; Bovo, Samuele; Di Lena, Pietro; Martelli, Pier Luigi; Savojardo, Castrense; Casadio, Rita; Cline, Melissa S.; De Baets, Greet; Bonache, Sandra; Díez, Orland; Gutiérrez-Enríquez, Sara; Fernández, Alejandro; Montalban, Gemma; Ootes, Lars; Özkan, Selen; Padilla, Natàlia; Riera, Casandra; De la Cruz, Xavier; Diekhans, Mark; Huwe, Peter J.; Wei, Qiong; Xu, Qifang; Dunbrack, Roland L.; Gotea, Valer; Elnitski, Laura; Margolin, Gennady; Fariselli, Piero; Kulakovskiy, Ivan V.; Makeev, Vsevolod J.; Penzar, Dmitry D.; Vorontsov, Ilya E.; Favorov, Alexander V.; Forman, Julia R.; Hasenahuer, Marcia; Fornasari, Maria S.; Parisi, Gustavo; Avsec, Ziga; Çelik, Muhammed H.; Nguyen, Thi Yen Duong; Gagneur, Julien; Shi, Fang-Yuan; Edwards, Matthew D.; Guo, Yuchun; Tian, Kevin; Zeng, Haoyang; Gifford, David K.; Göke, Jonathan; Zaucha, Jan; Gough, Julian; Ritchie, Graham R. S.; Frankish, Adam; Mudge, Jonathan M.; Harrow, Jennifer; Young, Erin L.; Yu, Yao; Huff, Chad D.; Murakami, Katsuhiko; Nagai, Yoko; Imanishi, Tadashi; Mungall, Christopher J.; Jacobsen, Julius O. B.; Kim, Dongsup; Jeong, Chan-Seok; Jones, David T.; Li, Mulin Jun; Guthrie, Violeta Beleva; Bhattacharya, Rohit; Chen, Yun-Ching; Douville, Christopher; Fan, Jean; Kim, Dewey; Masica, David; Niknafs, Noushin; Sengupta, Sohini; Tokheim, Collin; Turner, Tychele N.; Yeo, Hui Ting Grace; Karchin, Rachel; Shin, Sunyoung; Welch, Rene; Keles, Sunduz; Li, Yue; Kellis, Manolis; Corbi-Verge, Carles; Strokach, Alexey V.; Kim, Philip M.; Klein, Teri E.; Mohan, Rahul; Sinnott-Armstrong, Nicholas A.; Wainberg, Michael; Kundaje, Anshul; Gonzaludo, Nina; Mak, Angel C. Y.; Chhibber, Aparna; Lam, Hugo Y. K.; Dahary, Dvir; Fishilevich, Simon; Lancet, Doron; Lee, Insuk; Bachman, Benjamin; Katsonis, Panagiotis; Lua, Rhonald C.; Wilson, Stephen J.; Lichtarge, Olivier; Bhat, Rajendra R.; Sundaram, Laksshman; Viswanath, Vivek; Bellazzi, Riccardo; Nicora, Giovanna; Rizzo, Ettore; Limongelli, Ivan; Mezlini, Aziz M.; Chang, Ray; Kim, Serra; Lai, Carmen; O’Connor, Robert; Topper, Scott; van den Akker, Jeroen; Zhou, Alicia Y.; Zimmer, Anjali D.; Mishne, Gilad; Bergquist, Timothy R.; Breese, Marcus R.; Guerrero, Rafael F.; Jiang, Yuxiang; Kiga, Nikki; Li, Biao; Mort, Matthew; Pagel, Kymberleigh A.; Pejaver, Vikas; Stamboulian, Moses H.; Thusberg, Janita; Mooney, Sean D.; Teerakulkittipong, Nuttinee; Cao, Chen; Kundu, Kunal; Yin, Yizhou; Yu, Chen-Hsin; Kleyman, Michael; Lin, Chiao-Feng; Stackpole, Mary; Mount, Stephen M.; Eraslan, Gökcen; Mueller, Nikola S.; Naito, Tatsuhiko; Rao, Aliz R.; Azaria, Johnathan R.; Brodie, Aharon; Ofran, Yanay; Garg, Aditi; Pal, Debnath; Hawkins-Hooker, Alex; Kenlay, Henry; Reid, John; Mucaki, Eliseos J.; Rogan, Peter K.; Schwarz, Jana M.; Searls, David B.; Lee, Gyu Rie; Seok, Chaok; Krämer, Andreas; Shah, Sohela; Huang, ChengLai V.; Kirsch, Jack F.; Shatsky, Maxim; Cao, Yue; Chen, Haoran; Karimi, Mostafa; Moronfoye, Oluwaseyi; Sun, Yuanfei; Shen, Yang; Shigeta, Ron; Ford, Colby T.; Nodzak, Conor; Uppal, Aneeta; Shi, Xinghua; Joseph, Thomas; Kotte, Sujatha; Rana, Sadhna; Rao, Aditya; Saipradeep, V. G.; Sivadasan, Naveen; Sunderam, Uma; Stanke, Mario; Su, Andrew; Adzhubey, Ivan; Jordan, Daniel M.; Sunyaev, Shamil; Rousseau, Frederic; Schymkowitz, Joost; Van Durme, Joost; Tavtigian, Sean V.; Carraro, Marco; Giollo, Manuel; Tosatto, Silvio C. E.; Adato, Orit; Carmel, Liran; Cohen, Noa E.; Fenesh, Tzila; Holtzer, Tamar; Juven-Gershon, Tamar; Unger, Ron; Niroula, Abhishek; Olatubosun, Ayodeji; Väliaho, Jouni; Yang, Yang; Vihinen, Mauno; Wahl, Mary E.; Chang, Billy; Chong, Ka Chun; Hu, Inchi; Sun, Rui; Wu, William Ka Kei; Xia, Xiaoxuan; Zee, Benny C.; Wang, Maggie H.; Wang, Meng; Wu, Chunlei; Lu, Yutong; Chen, Ken; Yang, Yuedong; Yates, Christopher M.; Kreimer, Anat; Yan, Zhongxia; Yosef, Nir; Zhao, Huying; Wei, Zhipeng; Yao, Zhaomin; Zhou, Fengfeng; Folkman, Lukas; Zhou, Yaoqi; Daneshjou, Roxana; Altman, Russ B.; Inoue, Fumitaka; Ahituv, Nadav; Arkin, Adam P.; Lovisa, Federica; Bonvini, Paolo; Bowdin, Sarah; Gianni, Stefano; Mantuano, Elide; Minicozzi, Velia; Novak, Leonore; Pasquo, Alessandra; Pastore, Annalisa; Petrosino, Maria; Puglisi, Rita; Toto, Angelo; Veneziano, Liana; Chiaraluce, Roberta; Ball, Mad P.; Bobe, Jason R.; Church, George M.; Consalvi, Valerio; Cooper, David N.; Buckley, Bethany A.; Sheridan, Molly B.; Cutting, Garry R.; Scaini, Maria Chiara; Cygan, Kamil J.; Fredericks, Alger M.; Glidden, David T.; Neil, Christopher; Rhine, Christy L.; Fairbrother, William G.; Alontaga, Aileen Y.; Fenton, Aron W.; Matreyek, Kenneth A.; Starita, Lea M.; Fowler, Douglas M.; Löscher, Britt-Sabina; Franke, Andre; Adamson, Scott I.; Graveley, Brenton R.; Gray, Joe W.; Malloy, Mary J.; Kane, John P.; Kousi, Maria; Katsanis, Nicholas; Schubach, Max; Kircher, Martin; Mak, Angel C. Y.; Tang, Paul L. F.; Kwok, Pui-Yan; Lathrop, Richard H.; Clark, Wyatt T.; Yu, Guoying K.; Lebowitz, Jonathan H.; Benedicenti, Francesco; Bettella, Elisa; Bigoni, Stefania; Cesca, Federica; Mammi, Isabella; Marino-Buslje, Cristina; Milani, Donatella; Peron, Angela; Polli, Roberta; Sartori, Stefano; Stanzial, Franco; Toldo, Irene; Turolla, Licia; Aspromonte, Maria C.; Bellini, Mariagrazia; Leonardi, Emanuela; Liu, Xiaoming; Marshall, Christian; Mccombie, W. Richard; Elefanti, Lisa; Menin, Chiara; Meyn, M. Stephen; Murgia, Alessandra; Nadeau, Kari C. Y.; Neuhausen, Susan L.; Nussbaum, Robert L.; Pirooznia, Mehdi; Potash, James B.; Dimster-Denk, Dago F.; Rine, Jasper D.; Sanford, Jeremy R.; Snyder, Michael; Cote, Atina G.; Sun, Song; Verby, Marta W.; Weile, Jochen; Roth, Frederick P.; Tewhey, Ryan; Sabeti, Pardis C.; Campagna, Joan; Refaat, Marwan M.; Wojciak, Julianne; Grubb, Soren; Schmitt, Nicole; Shendure, Jay; Spurdle, Amanda B.; Stavropoulos, Dimitri J.; Walton, Nephi A.; Zandi, Peter P.; Ziv, Elad; Burke, Wylie; Chen, Flavia; Carr, Lawrence R.; Martinez, Selena; Paik, Jodi; Harris-Wai, Julie; Yarborough, Mark; Fullerton, Stephanie M.; Koenig, Barbara A.; Mcinnes, Gregory; Shigaki, Dustin; Chandonia, John-Marc; Furutsuki, Mabel; Kasak, Laura; Yu, Changhua; Chen, Rui; Friedberg, Iddo; Getz, Gad A.; Cong, Qian; Kinch, Lisa N.; Zhang, Jing; Grishin, Nick V.; Voskanian, Alin; Kann, Maricel G.; Tran, Elizabeth; Ioannidis, Nilah M.; Hunter, Jesse M.; Udani, Rupa; Cai, Binghuang; Morgan, Alexander A.; Sokolov, Artem; Stuart, Joshua M.; Minervini, Giovanni; Monzon, Alexander M.; Batzoglou, Serafim; Butte, Atul J.; Greenblatt, Marc S.; Hart, Reece K.; Hernandez, Ryan; Hubbard, Tim J. P.; Kahn, Scott; O’Donnell-Luria, Anne; Ng, Pauline C.; Shon, John; Veltman, Joris; Zook, Justin M. 2024-01-01 GENOME BIOLOGY - 1.01 Articolo in rivista CAGI flag 2024.pdf; 13059_2023_3113_MOESM1_ESM.docx; 13059_2023_3113_MOESM2_ESM.xls; 13059_2023_3113_MOESM3_ESM.xlsx; 13059_2023_3113_MOESM4_ESM.xls; 13059_2023_3113_MOESM5_ESM.xls; 13059_2023_3113_MOESM6_ESM.xls; 13059_2023_3113_MOESM8_ESM.docx; 13059_2023_3113_MOESM7_ESM.xls
Critical assessment of variant prioritization methods for rare disease diagnosis within the rare genomes project Stenton, Sarah L.; O'Leary, Melanie C.; Lemire, Gabrielle; VanNoy, Grace E.; DiTroia, Stephanie; ... espandiGanesh, Vijay S.; Groopman, Emily; O'Heir, Emily; Mangilog, Brian; Osei-Owusu, Ikeoluwa; Pais, Lynn S.; Serrano, Jillian; Singer-Berk, Moriel; Weisburd, Ben; Wilson, Michael W.; Austin-Tse, Christina; Abdelhakim, Marwa; Althagafi, Azza; Babbi, Giulia; Bellazzi, Riccardo; Bovo, Samuele; Carta, Maria Giulia; Casadio, Rita; Coenen, Pieter-Jan; De Paoli, Federica; Floris, Matteo; Gajapathy, Manavalan; Hoehndorf, Robert; Jacobsen, Julius O. B.; Joseph, Thomas; Kamandula, Akash; Katsonis, Panagiotis; Kint, Cyrielle; Lichtarge, Olivier; Limongelli, Ivan; Lu, Yulan; Magni, Paolo; Mamidi, Tarun Karthik Kumar; Martelli, Pier Luigi; Mulargia, Marta; Nicora, Giovanna; Nykamp, Keith; Pejaver, Vikas; Peng, Yisu; Pham, Thi Hong Cam; Podda, Maurizio S.; Rao, Aditya; Rizzo, Ettore; Saipradeep, Vangala G.; Savojardo, Castrense; Schols, Peter; Shen, Yang; Sivadasan, Naveen; Smedley, Damian; Soru, Dorian; Srinivasan, Rajgopal; Sun, Yuanfei; Sunderam, Uma; Tan, Wuwei; Tiwari, Naina; Wang, Xiao; Wang, Yaqiong; Williams, Amanda; Worthey, Elizabeth A.; Yin, Rujie; You, Yuning; Zeiberg, Daniel; Zucca, Susanna; Bakolitsa, Constantina; Brenner, Steven E.; Fullerton, Stephanie M.; Radivojac, Predrag; Rehm, Heidi L.; O'Donnell-Luria, Anne 2024-01-01 HUMAN GENOMICS - 1.01 Articolo in rivista Human Mutation - 2024- Stenton - Critical assessment of variant prioritization.pdf
Dispersion of antimicrobial resistant bacteria in pig farms and in the surrounding environment Scicchitano, Daniel; Leuzzi, Daniela; Babbi, Giulia; Palladino, Giorgia; Turroni, Silvia; Laczny,... espandi Cédric Christian; Wilmes, Paul; Correa, Federico; Leekitcharoenphon, Pimlapas; Savojardo, Castrense; Luise, Diana; Martelli, Pierluigi; Trevisi, Paolo; Aarestrup, Frank Møller; Candela, Marco; Rampelli, Simone 2024-01-01 ANIMAL MICROBIOME - 1.01 Articolo in rivista s42523-024-00305-8.pdf
DOME Registry: implementing community-wide recommendations for reporting supervised machine learning in biology Attafi, Omar Abdelghani; Clementel, Damiano; Kyritsis, Konstantinos; Capriotti, Emidio; Farrell, ... espandiGavin; Fragkouli, Styliani-Christina; Castro, Leyla Jael; Hatos, András; Lenaerts, Tom; Mazurenko, Stanislav; Mozaffari, Soroush; Pradelli, Franco; Ruch, Patrick; Savojardo, Castrense; Turina, Paola; Zambelli, Federico; Piovesan, Damiano; Monzon, Alexander Miguel; Psomopoulos, Fotis; Tosatto, Silvio C E 2024-01-01 GIGASCIENCE - 1.01 Articolo in rivista giae094.pdf
E-pRSA: Embeddings Improve the Prediction of Residue Relative Solvent Accessibility in Protein Sequence Manfredi, Matteo; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita 2024-01-01 JOURNAL OF MOLECULAR BIOLOGY - 1.01 Articolo in rivista 1-s2.0-S0022283624000664-main.pdf; 1-s2.0-S0022283624000664-mmc1.docx; E-pRSA ManuscriptUnmarked-Complete.pdf
MultifacetedProtDB: a database of human proteins with multiple functions Bertolini, Elisa; Babbi, Giulia; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita 2024-01-01 NUCLEIC ACIDS RESEARCH - 1.01 Articolo in rivista gkad783.pdf
Routes of dispersion of antibiotic resistance genes from the poultry farm system Daniel Scicchitano, Giulia Babbi, Giorgia Palladino, Silvia Turroni, Yitagele Terefe Mekonnen, Cé... espandidric Laczny, Paul Wilmes, Pimlapas Leekitcharoenphon, Andrea Castagnetti, Federica D'Amico, Patrizia Brigidi, Castrense Savojardo, Gerardo Manfreda, Pierluigi Martelli, Alessandra De Cesare, Frank Møller Aarestrup, Marco Candela, Simone Rampelli 2024-01-01 SCIENCE OF THE TOTAL ENVIRONMENT - 1.01 Articolo in rivista 1-s2.0-S0048969723077161-main-min.pdf
Testing the Capability of Embedding-Based Alignments on the GST Superfamily Classification: The Role of Protein Length Vazzana, Gabriele; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita 2024-01-01 MOLECULES - 1.01 Articolo in rivista -
CoCoNat: a novel method based on deep learning for coiled-coil prediction Madeo G.; Savojardo C.; Manfredi M.; Martelli P.L.; Casadio R. 2023-01-01 BIOINFORMATICS - 1.01 Articolo in rivista btad495.pdf; btad495_supplementary_data.pdf
Comparative genomics of Hox and ParaHox genes among major lineages of Branchiopoda with emphasis on tadpole shrimps Nicolini F.; Martelossi J.; Forni G.; Savojardo C.; Mantovani B.; Luchetti A. 2023-01-01 FRONTIERS IN ECOLOGY AND EVOLUTION - 1.01 Articolo in rivista 23_Nicolinietal_FEE.pdf
Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study Schweke, H.; Xu, Q.; Tauriello, G.; Pantolini, L.; Schwede, T.; Cazals, F.; Lheritier, A.; Fernan... espandidez-Recio, J.; Rodriguez-Lumbreras, L. A.; Schueler-Furman, O.; Varga, J. K.; Jimenez-Garcia, B.; Reau, M. F.; Bonvin, A. M. J. J.; Savojardo, C.; Martelli, P. L.; Casadio, R.; Tubiana, J.; Wolfson, H. J.; Oliva, R.; Barradas-Bautista, D.; Ricciardelli, T.; Cavallo, L.; Venclovas, C.; Olechnovic, K.; Guerois, R.; Andreani, J.; Martin, J.; Wang, X.; Terashi, G.; Sarkar, D.; Christoffer, C.; Aderinwale, T.; Verburgt, J.; Kihara, D.; Marchand, A.; Correia, B. E.; Duan, R.; Qiu, L.; Xu, X.; Zhang, S.; Zou, X.; Dey, S.; Dunbrack, R. L.; Levy, E. D.; Wodak, S. J. 2023-01-01 PROTEOMICS - 1.01 Articolo in rivista -
Finding functional motifs in protein sequences with deep learning and natural language models Savojardo C.; Martelli P.L.; Casadio R. 2023-01-01 CURRENT OPINION IN STRUCTURAL BIOLOGY - 1.01 Articolo in rivista 1-s2.0-S0959440X2300115X-main.pdf
ISPRED-SEQ: Deep Neural Networks and Embeddings for Predicting Interaction Sites in Protein Sequences Manfredi M.; Savojardo C.; Martelli P.L.; Casadio R. 2023-01-01 JOURNAL OF MOLECULAR BIOLOGY - 1.01 Articolo in rivista 1-s2.0-S0022283623000190-main.pdf; 1-s2.0-S0022283623000190-mmc1(2).docx
Resources and tools for rare disease variant interpretation Licata L.; Via A.; Turina P.; Babbi G.; Benevenuta S.; Carta C.; Casadio R.; Cicconardi A.; Facch... espandiiano A.; Fariselli P.; Giordano D.; Isidori F.; Marabotti A.; Martelli P.L.; Pascarella S.; Pinelli M.; Pippucci T.; Russo R.; Savojardo C.; Scafuri B.; Valeriani L.; Capriotti E. 2023-01-01 FRONTIERS IN MOLECULAR BIOSCIENCES - 1.01 Articolo in rivista fmolb-10-1169109.pdf; 1169.zip
Wood feeding and social living: Draft genome of the subterranean termite Reticulitermes lucifugus (Blattodea; Termitoidae) Martelossi J.; Forni G.; Iannello M.; Savojardo C.; Martelli P.L.; Casadio R.; Mantovani B.; Luch... espandietti A.; Rota-Stabelli O. 2023-01-01 INSECT MOLECULAR BIOLOGY - 1.01 Articolo in rivista -
A glance into mthfr deficiency at a molecular level Savojardo C.; Babbi G.; Baldazzi D.; Martelli P.L.; Casadio R. 2022-01-01 INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES - 1.01 Articolo in rivista ijms-23-00167-v2.pdf