MERLOTTI, ALESSANDRA
MERLOTTI, ALESSANDRA
DIPARTIMENTO DI FISICA E ASTRONOMIA "AUGUSTO RIGHI"
Ricercatori a tempo determinato
Covering Hierarchical Dirichlet Mixture Models on binary data to enhance genomic stratifications in onco-hematology
2024 Dall'Olio, Daniele; Sträng, Eric; Turki, Amin T; Tettero, Jesse M; Barbus, Martje; Schulze-Rath, Renate; Elicegui, Javier Martinez; Matteuzzi, Tommaso; Merlotti, Alessandra; Carota, Luciana; Sala, Claudia; Della Porta, Matteo G; Giampieri, Enrico; Hernández-Rivas, Jesús María; Bullinger, Lars; Castellani, Gastone
Time-series sewage metagenomics distinguishes seasonal, human-derived and environmental microbial communities potentially allowing source-attributed surveillance
2024 Becsei Á.; Fuschi A.; Otani S.; Kant R.; Weinstein I.; Alba P.; Stéger J.; Visontai D.; Brinch C.; de Graaf M.; Schapendonk C.M.E.; Battisti A.; De Cesare A.; Oliveri C.; Troja F.; Sironen T.; Vapalahti O.; Pasquali F.; Bányai K.; Makó M.; Pollner P.; Merlotti A.; Koopmans M.; Csabai I.; Remondini D.; Aarestrup F.M.; Munk P.
Comparison of Source Attribution Methodologies for Human Campylobacteriosis
2023 Brinch, Maja Lykke; Hald, Tine; Wainaina, Lynda; Merlotti, Alessandra; Remondini, Daniel; Henri, Clementine; Njage, Patrick Murigu Kamau
Effectiveness of Radiomic ZOT Features in the Automated Discrimination of Oncocytoma from Clear Cell Renal Cancer
2023 Carlini, Gianluca; Gaudiano, Caterina; Golfieri, Rita; Curti, Nico; Biondi, Riccardo; Bianchi, Lorenzo; Schiavina, Riccardo; Giunchi, Francesca; Faggioni, Lorenzo; Giampieri, Enrico; Merlotti, Alessandra; Dall’Olio, Daniele; Sala, Claudia; Pandolfi, Sara; Remondini, Daniel; Rustici, Arianna; Pastore, Luigi Vincenzo; Scarpetti, Leonardo; Bortolani, Barbara; Cercenelli, Laura; Brunocilla, Eugenio; Marcelli, Emanuela; Coppola, Francesca; Castellani, Gastone
Effectiveness of Semi-Supervised Active Learning in Automated Wound Image Segmentation
2023 Curti, Nico; Merli, Yuri; Zengarini, Corrado; Giampieri, Enrico; Merlotti, Alessandra; Dall'Olio, Daniele; Marcelli, Emanuela; Bianchi, Tommaso; Castellani, Gastone
Genetic diversity and antimicrobial resistance of extraintestinal E. coli populations pre- and post-antimicrobial therapy on broilers affected by colisepticemia
2023 Pasquali F.; Crippa C.; Parisi A.; Lucchi A.; Gambi L.; Merlotti A.; Remondini D.; Stonfer M.; Manfreda G.
Automated Prediction of the Response to Neoadjuvant Chemoradiotherapy in Patients Affected by Rectal Cancer
2022 Giuseppe Filitto; Francesca Coppola; Nico Curti; Enrico Giampieri; Daniele Dall'Olio; Alessandra Merlotti; Arrigo Cattabriga; Maria Adriana Cocozza; Makoto Taninokuchi Tomassoni; Daniel Remondini; Luisa Pierotti; Lidia Strigari; Dajana Cuicchi; Alessandra Guido; Karim Rihawi; Antonietta D???Errico; Francesca Di Fabio; Gilberto Poggioli; Alessio Giuseppe Morganti; Luigi Ricciardiello; Rita Golfieri; Gastone Castellani
Clinical Implications of p53 Dysfunction in Patients with Myelodysplastic Syndromes
2022 Riva, Elena; Zampini, Matteo; Alberto, Termanini; Dall'Olio, Lorenzo; Merlotti, Alessandra; Kulasekararaj, Austin; Calvi, Michela; Di Vito, Clara; Rahal, Daoud; Bonometti, Arturo; Croci, Giorgio; Boveri, Emanuela; Gianelli, Umberto; Ponzoni, Maurilio; Russo, Antonio; Tinterri, Benedetta; Re, Francesca; Sauta, Elisabetta; Saba, Elena; Travaglino, Erica; Ubezio, Marta; Campagna, Alessia; Lanino, Luca; Maggioni, Giulia; Tentori, Cristina Astrid; Milanesi, Chiara; Manes, Nicla; D'Amico, Saverio; Ficara, Francesca; Crisafulli, Laura; Mavilio, Domenico; Lugli, Enrico; Santoro, Armando; Diez-Campelo, Maria; Sanz, Guillermo; Solé, Francesc; Platzbecker, Uwe; Santini, Valeria; Kordasti, Shahram; Fenaux, Pierre; Haferlach, Torsten; Remondini, Daniel; Gastone, Castellani; Della Porta, Matteo G.
Identification of a Maturation Plasma Cell Index through a Highly Sensitive Droplet Digital PCR Assay Gene Expression Signature Validation in Newly Diagnosed Multiple Myeloma Patients
2022 Martello M.; Solli V.; Termini R.; Kanapari A.; Remondini D.; Borsi E.; Poletti A.; Armuzzi S.; Taurisano B.; Vigliotta I.; Mazzocchetti G.; Zamagni E.; Merlotti A.; Tacchetti P.; Pantani L.; Rocchi S.; Rizzello I.; Mancuso K.; Cavo M.; Terragna C.
Intraspecies characterization of bacteria via evolutionary modeling of protein domains
2022 Budimir, Iva; Giampieri, Enrico; Saccenti, Edoardo; Suarez-Diez, Maria; Tarozzi, Martina; Dall'Olio, Daniele; Merlotti, Alessandra; Curti, Nico; Remondini, Daniel; Castellani, Gastone; Sala, Claudia
Prediction of Overall Survival in Cervical Cancer Patients Using PET/CT Radiomic Features
2022 Carlini, G; Curti, N; Strolin, S; Giampieri, E; Sala, C; Dall'Olio, D; Merlotti, A; Fanti, S; Remondini, D; Nanni, C; Strigari, L; Castellani, G
Source Attribution of Human Campylobacteriosis Using Whole-Genome Sequencing Data and Network Analysis
2022 Wainaina L.; Merlotti A.; Remondini D.; Henri C.; Hald T.; Njage P.M.K.
Network-based strategies for protein characterization
2021 Merlotti A.; Menichetti G.; Fariselli P.; Capriotti E.; Remondini D.
Merging 1D and 3D genomic information: Challenges in modelling and validation
2020 Merlotti A.; Rosa A.; Remondini D.
Network approach to source attribution of Salmonella enterica serovar Typhimurium and its monophasic variant
2020 Merlotti A.; Manfreda G.; Munck N.; Hald T.; Litrup E.; Nielsen E.M.; Remondini D.; Pasquali F.
Statistical modelling of CG interdistance across multiple organisms
2018 Merlotti, A.; Faria do Valle, I.; Castellani, G.*; Remondini, D.
Titolo | Autore(i) | Anno | Periodico | Editore | Tipo | File |
---|---|---|---|---|---|---|
Covering Hierarchical Dirichlet Mixture Models on binary data to enhance genomic stratifications in onco-hematology | Dall'Olio, Daniele; Sträng, Eric; Turki, Amin T; Tettero, Jesse M; Barbus, Martje; Schulze-Rath, ...Renate; Elicegui, Javier Martinez; Matteuzzi, Tommaso; Merlotti, Alessandra; Carota, Luciana; Sala, Claudia; Della Porta, Matteo G; Giampieri, Enrico; Hernández-Rivas, Jesús María; Bullinger, Lars; Castellani, Gastone | 2024-01-01 | PLOS COMPUTATIONAL BIOLOGY | - | 1.01 Articolo in rivista | dallOlio et al 2024.pdf; journal.pcbi.1011299.s001.pdf; HDMM_refinement-main.zip |
Time-series sewage metagenomics distinguishes seasonal, human-derived and environmental microbial communities potentially allowing source-attributed surveillance | Becsei Á.; Fuschi A.; Otani S.; Kant R.; Weinstein I.; Alba P.; Stéger J.; Visontai D.; Brinch C....; de Graaf M.; Schapendonk C.M.E.; Battisti A.; De Cesare A.; Oliveri C.; Troja F.; Sironen T.; Vapalahti O.; Pasquali F.; Bányai K.; Makó M.; Pollner P.; Merlotti A.; Koopmans M.; Csabai I.; Remondini D.; Aarestrup F.M.; Munk P. | 2024-01-01 | NATURE COMMUNICATIONS | - | 1.01 Articolo in rivista | time series sewage VEO_fuschi remondini_Naturecomm24.pdf; 41467_2024_51957_MOESM4_ESM.xlsx; 41467_2024_51957_MOESM1_ESM.pdf; 41467_2024_51957_MOESM3_ESM.docx; SourceData.xlsx |
Comparison of Source Attribution Methodologies for Human Campylobacteriosis | Brinch, Maja Lykke; Hald, Tine; Wainaina, Lynda; Merlotti, Alessandra; Remondini, Daniel; Henri, ...Clementine; Njage, Patrick Murigu Kamau | 2023-01-01 | PATHOGENS | - | 1.01 Articolo in rivista | pathogens-12-00786.pdf |
Effectiveness of Radiomic ZOT Features in the Automated Discrimination of Oncocytoma from Clear Cell Renal Cancer | Carlini, Gianluca; Gaudiano, Caterina; Golfieri, Rita; Curti, Nico; Biondi, Riccardo; Bianchi, Lo...renzo; Schiavina, Riccardo; Giunchi, Francesca; Faggioni, Lorenzo; Giampieri, Enrico; Merlotti, Alessandra; Dall’Olio, Daniele; Sala, Claudia; Pandolfi, Sara; Remondini, Daniel; Rustici, Arianna; Pastore, Luigi Vincenzo; Scarpetti, Leonardo; Bortolani, Barbara; Cercenelli, Laura; Brunocilla, Eugenio; Marcelli, Emanuela; Coppola, Francesca; Castellani, Gastone | 2023-01-01 | JOURNAL OF PERSONALIZED MEDICINE | - | 1.01 Articolo in rivista | jpm-13-00478-v2.pdf |
Effectiveness of Semi-Supervised Active Learning in Automated Wound Image Segmentation | Curti, Nico; Merli, Yuri; Zengarini, Corrado; Giampieri, Enrico; Merlotti, Alessandra; Dall'Olio,... Daniele; Marcelli, Emanuela; Bianchi, Tommaso; Castellani, Gastone | 2023-01-01 | INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES | - | 1.01 Articolo in rivista | Effectiveness of Semi-Supervised Active_Curti_2022.pdf; ijms-24-00706-s001.zip |
Genetic diversity and antimicrobial resistance of extraintestinal E. coli populations pre- and post-antimicrobial therapy on broilers affected by colisepticemia | Pasquali F.; Crippa C.; Parisi A.; Lucchi A.; Gambi L.; Merlotti A.; Remondini D.; Stonfer M.; Ma...nfreda G. | 2023-01-01 | ANIMALS | - | 1.01 Articolo in rivista | GENETI~1.PDF |
Automated Prediction of the Response to Neoadjuvant Chemoradiotherapy in Patients Affected by Rectal Cancer | Giuseppe Filitto; Francesca Coppola; Nico Curti; Enrico Giampieri; Daniele Dall'Olio; Alessandra ...Merlotti; Arrigo Cattabriga; Maria Adriana Cocozza; Makoto Taninokuchi Tomassoni; Daniel Remondini; Luisa Pierotti; Lidia Strigari; Dajana Cuicchi; Alessandra Guido; Karim Rihawi; Antonietta D???Errico; Francesca Di Fabio; Gilberto Poggioli; Alessio Giuseppe Morganti; Luigi Ricciardiello; Rita Golfieri; Gastone Castellani | 2022-01-01 | CANCERS | - | 1.01 Articolo in rivista | cancers-14-02231-v3.pdf |
Clinical Implications of p53 Dysfunction in Patients with Myelodysplastic Syndromes | Riva, Elena; Zampini, Matteo; Alberto, Termanini; Dall'Olio, Lorenzo; Merlotti, Alessandra; Kulas...ekararaj, Austin; Calvi, Michela; Di Vito, Clara; Rahal, Daoud; Bonometti, Arturo; Croci, Giorgio; Boveri, Emanuela; Gianelli, Umberto; Ponzoni, Maurilio; Russo, Antonio; Tinterri, Benedetta; Re, Francesca; Sauta, Elisabetta; Saba, Elena; Travaglino, Erica; Ubezio, Marta; Campagna, Alessia; Lanino, Luca; Maggioni, Giulia; Tentori, Cristina Astrid; Milanesi, Chiara; Manes, Nicla; D'Amico, Saverio; Ficara, Francesca; Crisafulli, Laura; Mavilio, Domenico; Lugli, Enrico; Santoro, Armando; Diez-Campelo, Maria; Sanz, Guillermo; Solé, Francesc; Platzbecker, Uwe; Santini, Valeria; Kordasti, Shahram; Fenaux, Pierre; Haferlach, Torsten; Remondini, Daniel; Gastone, Castellani; Della Porta, Matteo G. | 2022-01-01 | BLOOD | - | 1.06 Abstract in rivista | - |
Identification of a Maturation Plasma Cell Index through a Highly Sensitive Droplet Digital PCR Assay Gene Expression Signature Validation in Newly Diagnosed Multiple Myeloma Patients | Martello M.; Solli V.; Termini R.; Kanapari A.; Remondini D.; Borsi E.; Poletti A.; Armuzzi S.; T...aurisano B.; Vigliotta I.; Mazzocchetti G.; Zamagni E.; Merlotti A.; Tacchetti P.; Pantani L.; Rocchi S.; Rizzello I.; Mancuso K.; Cavo M.; Terragna C. | 2022-01-01 | INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES | - | 1.01 Articolo in rivista | ijms-23-12450.pdf |
Intraspecies characterization of bacteria via evolutionary modeling of protein domains | Budimir, Iva; Giampieri, Enrico; Saccenti, Edoardo; Suarez-Diez, Maria; Tarozzi, Martina; Dall'Ol...io, Daniele; Merlotti, Alessandra; Curti, Nico; Remondini, Daniel; Castellani, Gastone; Sala, Claudia | 2022-01-01 | SCIENTIFIC REPORTS | - | 1.01 Articolo in rivista | s41598-022-21036-3.pdf |
Prediction of Overall Survival in Cervical Cancer Patients Using PET/CT Radiomic Features | Carlini, G; Curti, N; Strolin, S; Giampieri, E; Sala, C; Dall'Olio, D; Merlotti, A; Fanti, S; Rem...ondini, D; Nanni, C; Strigari, L; Castellani, G | 2022-01-01 | APPLIED SCIENCES | - | 1.01 Articolo in rivista | applsci-12-05946-v2 (1).pdf |
Source Attribution of Human Campylobacteriosis Using Whole-Genome Sequencing Data and Network Analysis | Wainaina L.; Merlotti A.; Remondini D.; Henri C.; Hald T.; Njage P.M.K. | 2022-01-01 | PATHOGENS | - | 1.01 Articolo in rivista | Source attribution human campylobacteriosis network_Merlotti Remondini Njage_pathogens22.pdf |
Network-based strategies for protein characterization | Merlotti A.; Menichetti G.; Fariselli P.; Capriotti E.; Remondini D. | 2021-01-01 | ADVANCES IN PROTEIN CHEMISTRY AND STRUCTURAL BIOLOGY | - | 1.01 Articolo in rivista | - |
Merging 1D and 3D genomic information: Challenges in modelling and validation | Merlotti A.; Rosa A.; Remondini D. | 2020-01-01 | BIOCHIMICA ET BIOPHYSICA ACTA. GENE REGULATORY MECHANISMS | - | 1.01 Articolo in rivista | post_print11585_733861_def.pdf |
Network approach to source attribution of Salmonella enterica serovar Typhimurium and its monophasic variant | Merlotti A.; Manfreda G.; Munck N.; Hald T.; Litrup E.; Nielsen E.M.; Remondini D.; Pasquali F. | 2020-01-01 | FRONTIERS IN MICROBIOLOGY | - | 1.01 Articolo in rivista | Frontiers 2020 - SA by Networks.pdf |
Statistical modelling of CG interdistance across multiple organisms | Merlotti, A.; Faria do Valle, I.; Castellani, G.*; Remondini, D. | 2018-01-01 | BMC BIOINFORMATICS | - | 1.01 Articolo in rivista | CG interdistance multiple organisms_Merlotti Remondini_BMCBioinfo18.pdf |