Sfoglia per Autore
Boxed molecular dynamics: A simple and general technique for accelerating rare event kinetics and mapping free energy in large molecular systems
2009 Glowacki D.R.; Paci E.; Shalashilin D.V.
CHARMM: The biomolecular simulation program
2009 Brooks B.R.; Brooks III C.L.; Mackerell Jr. A.D.; Nilsson L.; Petrella R.J.; Roux B.; Won Y.; Archontis G.; Bartels C.; Boresch S.; Caflisch A.; Caves L.; Cui Q.; Dinner A.R.; Feig M.; Fischer S.; Gao J.; Hodoscek M.; Im W.; Kuczera K.; Lazaridis T.; Ma J.; Ovchinnikov V.; Paci E.; Pastor R.W.; Post C.B.; Pu J.Z.; Schaefer M.; Tidor B.; Venable R.M.; Woodcock H.L.; Wu X.; Yang W.; York D.M.; Karplus M.
Probing the free energy landscape of the FBP28 WW domain using multiple techniques
2009 Periole X.; Allen L.R.; Tamiola K.; Mark A.E.; Paci E.
Non-Native Interactions Are Critical for Mechanical Strength in PKD Domains
2009 Forman J.R.; Yew Z.T.; Qamar S.; Sandford R.N.; Paci E.; Clarke J.
Analysis of the free-energy surface of proteins from reversible folding simulations
2009 Allen L.R.; Krivov S.V.; Paci E.
Fluorescence Lifetimes of Tyrosine Residues in Cytochrome c″ as Local Probes to Study Protein Unfolding
2009 Noronha M.; Santos R.; Paci E.; Santos H.; Macanita A.L.
Dynamics of the coiled-coil unfolding transition of myosin rod probed by dissipation force spectrum
2010 Taniguchi Y.; Khatri B.S.; Brockwell D.J.; Paci E.; Kawakami M.
Direct evidence of the multidimensionality of the free-energy landscapes of proteins revealed by mechanical probes
2010 Yew Z.T.; Schlierf M.; Rief M.; Paci E.
Fluctuation power spectra reveal dynamical heterogeneity of peptides
2010 Khatri B.; Yew Z.T.; Krivov S.; McLeish T.; Paci E.
The major determinant of exendin-4/glucagon-like peptide 1 differential affinity at the rat glucagon-like peptide 1 receptor N-terminal domain is a hydrogen bond from SER-32 of exendin-4: RESEARCH PAPER
2010 Mann R.J.; Nasr N.E.; Sinfield J.K.; Paci E.; Donnelly D.
Simulation of fluorescence resonance energy transfer experiments: Effect of the dyes on protein folding
2010 Allen L.R.; Paci E.
Mechanical unfolding of an ankyrin repeat protein
2010 Serquera D.; Lee W.; Settanni G.; Marszalek P.E.; Paci E.; Ltzhaki L.S.
Complex unfolding kinetics of single-domain proteins in the presence of force
2010 Schlierf M.; Yew Z.T.; Rief M.; Paci E.
Boxed molecular dynamics: Decorrelation time scales and the kinetic master equation
2011 Glowacki D.R.; Paci E.; Shalashilin D.V.
Communication: Conformation state diagram of polypeptides: A chain length induced α - β transition
2011 Ricchiuto P.; Brukhno A.V.; Paci E.; Auer S.
Free Energy Landscapes of Proteins: Insights from Mechanical Probes
2011 Yew Z.T.; Olmsted P.D.; Paci E.
Simulation Studies of Force-Induced Unfolding
2012 Yew Z.T.; Paci E.
Prying open single GroES Ring complexes by force reveals cooperativity across domains
2012 Ikeda-Kobayashi A.; Taniguchi Y.; Brockwell D.J.; Paci E.; Kawakami M.
Peptide kinetics from picoseconds to microseconds using boxed molecular dynamics: Power law rate coefficients in cyclisation reactions
2012 Shalashilin D.V.; Beddard G.S.; Paci E.; Glowacki D.R.
Using models to design new bioinspired materials
2012 Paci E.
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