BERNETTI, MATTIA
BERNETTI, MATTIA
ARAG - AREA FINANZA E CONTABILITA'
Collaboratori
An Integrated Markov State Model and Path Metadynamics Approach to Characterize Drug Binding Processes
2019 Bernetti M.; Masetti M.; Recanatini M.; Amaro R.E.; Cavalli A.
Binding Residence Time through Scaled Molecular Dynamics: A Prospective Application to hDAAO Inhibitors
2018 Bernetti, Mattia; Rosini, Elena; Mollica, Luca; Masetti, Matteo; Pollegioni, Loredano; Recanatini, Maurizio; Cavalli, Andrea
Computational drug discovery under RNA times
2022 Bernetti M.; Aguti R.; Bosio S.; Recanatini M.; Masetti M.; Cavalli A.
Data-Driven Molecular Dynamics: A Multifaceted Challenge
2020 Bernetti, Mattia; Bertazzo, Martina; Masetti, Matteo
Development of a multisite model for Ni(II) ion in solution from thermodynamic and kinetic data
2017 Masetti, Matteo; Musiani, Francesco; Bernetti, Mattia; Falchi, Federico; Cavalli, Andrea; Ciurli, Stefano; Recanatini, Maurizio
Dissecting the BRCA2 - RAD51 interaction by integrating computational and experimental biophysics
2023 Rinaldi F., Bernetti M., Bresciani V., Girotto S., Cavalli A.
Elucidating the BRCA2 - RAD51 interaction by integrating computational and experimental biophysics
2023 Rinaldi F., Bernetti M., Bresciani V., Girotto S., Cavalli A.
Enhanced Molecular Dynamics Simulations of Intrinsically Disordered Proteins
2020 Masetti, Matteo; Bernetti, Mattia; Cavalli, Andrea
Fully Flexible Docking via Reaction-Coordinate-Independent Molecular Dynamics Simulations
2018 Bertazzo, Martina; Bernetti, Mattia; Recanatini, Maurizio; Masetti, Matteo; Cavalli, Andrea
Integration of computational and experimental biophysics reveals novel insights on the BRCA2 - RAD51 interaction
2023 Rinaldi F., Bernetti M., Bresciani V., Girotto S., Cavalli A.
Kinetics of Drug Binding and Residence Time
2019 Bernetti M.; Masetti M.; Rocchia W.; Cavalli A.
On the allosteric puzzle and pocket crosstalk through computational means
2023 Aguti R.; Bernetti M.; Bosio S.; Decherchi S.; Cavalli A.
Predicting Residence Time and Drug Unbinding Pathway through Scaled Molecular Dynamics
2019 Schuetz, Doris A.; Bernetti, Mattia; Bertazzo, Martina; Musil, Djordje; Eggenweiler, Hans-Michael; Recanatini, Maurizio; Masetti, Matteo*; Ecker, Gerhard F.; Cavalli, Andrea
Protein-ligand (un)binding kinetics as a new paradigm for drug discovery at the crossroad between experiments and modelling
2017 Bernetti, M.; Cavalli, A.; Mollica, L
Structural and Kinetic Characterization of the Intrinsically Disordered Protein SeV NTAIL through Enhanced Sampling Simulations
2017 Bernetti, Mattia; Masetti, Matteo; Pietrucci, Fabio; Blackledge, Martin; Jensen, Malene Ringkjobing; Recanatini, Maurizio; Mollica, Luca; Cavalli, Andrea
| Titolo | Autore(i) | Anno | Periodico | Editore | Tipo | File |
|---|---|---|---|---|---|---|
| An Integrated Markov State Model and Path Metadynamics Approach to Characterize Drug Binding Processes | Bernetti M.; Masetti M.; Recanatini M.; Amaro R.E.; Cavalli A. | 2019-01-01 | JOURNAL OF CHEMICAL THEORY AND COMPUTATION | - | 1.01 Articolo in rivista | - |
| Binding Residence Time through Scaled Molecular Dynamics: A Prospective Application to hDAAO Inhibitors | Bernetti, Mattia; Rosini, Elena; Mollica, Luca; Masetti, Matteo; Pollegioni, Loredano; Recanatini..., Maurizio; Cavalli, Andrea | 2018-01-01 | JOURNAL OF CHEMICAL INFORMATION AND MODELING | - | 1.01 Articolo in rivista | - |
| Computational drug discovery under RNA times | Bernetti M.; Aguti R.; Bosio S.; Recanatini M.; Masetti M.; Cavalli A. | 2022-01-01 | QRB DISCOVERY | - | 1.01 Articolo in rivista | 2022_Bernetti.pdf |
| Data-Driven Molecular Dynamics: A Multifaceted Challenge | Bernetti, Mattia; Bertazzo, Martina; Masetti, Matteo | 2020-01-01 | PHARMACEUTICALS | - | 1.01 Articolo in rivista | 2020_bernetti.pdf |
| Development of a multisite model for Ni(II) ion in solution from thermodynamic and kinetic data | Masetti, Matteo; Musiani, Francesco; Bernetti, Mattia; Falchi, Federico; Cavalli, Andrea; Ciurli,... Stefano; Recanatini, Maurizio | 2017-01-01 | JOURNAL OF COMPUTATIONAL CHEMISTRY | - | 1.01 Articolo in rivista | - |
| Dissecting the BRCA2 - RAD51 interaction by integrating computational and experimental biophysics | Rinaldi F., Bernetti M., Bresciani V., Girotto S., Cavalli A. | 2023-01-01 | - | - | 4.03 Poster | - |
| Elucidating the BRCA2 - RAD51 interaction by integrating computational and experimental biophysics | Rinaldi F., Bernetti M., Bresciani V., Girotto S., Cavalli A. | 2023-01-01 | - | - | 4.02 Riassunto (Abstract) | - |
| Enhanced Molecular Dynamics Simulations of Intrinsically Disordered Proteins | Masetti, Matteo; Bernetti, Mattia; Cavalli, Andrea | 2020-01-01 | - | Humana | 2.01 Capitolo / saggio in libro | - |
| Fully Flexible Docking via Reaction-Coordinate-Independent Molecular Dynamics Simulations | Bertazzo, Martina; Bernetti, Mattia; Recanatini, Maurizio; Masetti, Matteo; Cavalli, Andrea | 2018-01-01 | JOURNAL OF CHEMICAL INFORMATION AND MODELING | - | 1.01 Articolo in rivista | - |
| Integration of computational and experimental biophysics reveals novel insights on the BRCA2 - RAD51 interaction | Rinaldi F., Bernetti M., Bresciani V., Girotto S., Cavalli A. | 2023-01-01 | - | - | 4.03 Poster | - |
| Kinetics of Drug Binding and Residence Time | Bernetti M.; Masetti M.; Rocchia W.; Cavalli A. | 2019-01-01 | ANNUAL REVIEW OF PHYSICAL CHEMISTRY | - | 1.01 Articolo in rivista | - |
| On the allosteric puzzle and pocket crosstalk through computational means | Aguti R.; Bernetti M.; Bosio S.; Decherchi S.; Cavalli A. | 2023-01-01 | JOURNAL OF CHEMICAL PHYSICS ONLINE | - | 1.01 Articolo in rivista | - |
| Predicting Residence Time and Drug Unbinding Pathway through Scaled Molecular Dynamics | Schuetz, Doris A.; Bernetti, Mattia; Bertazzo, Martina; Musil, Djordje; Eggenweiler, Hans-Michael...; Recanatini, Maurizio; Masetti, Matteo*; Ecker, Gerhard F.; Cavalli, Andrea | 2019-01-01 | JOURNAL OF CHEMICAL INFORMATION AND MODELING | - | 1.01 Articolo in rivista | - |
| Protein-ligand (un)binding kinetics as a new paradigm for drug discovery at the crossroad between experiments and modelling | Bernetti, M.; Cavalli, A.; Mollica, L | 2017-01-01 | MEDCHEMCOMM | - | 1.01 Articolo in rivista | - |
| Structural and Kinetic Characterization of the Intrinsically Disordered Protein SeV NTAIL through Enhanced Sampling Simulations | Bernetti, Mattia; Masetti, Matteo; Pietrucci, Fabio; Blackledge, Martin; Jensen, Malene Ringkjobi...ng; Recanatini, Maurizio; Mollica, Luca; Cavalli, Andrea | 2017-01-01 | JOURNAL OF PHYSICAL CHEMISTRY. B, CONDENSED MATTER, MATERIALS, SURFACES, INTERFACES & BIOPHYSICAL | - | 1.01 Articolo in rivista | - |