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BOVO, SAMUELE

BOVO, SAMUELE  

DIPARTIMENTO DI SCIENZE E TECNOLOGIE AGRO-ALIMENTARI  

Ricercatori a tempo determinato  

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A comprehensive atlas of nuclear sequences of mitochondrial origin (NUMT) inserted into the pig genome Bolner, M.; Bovo, S.; Ballan, M.; Schiavo, G.; Taurisano, V.; Ribani, A.; Bertolini, F.; Fontanes...i, L. 2024-01-01 GENETICS SELECTION EVOLUTION - 1.01 Articolo in rivista s12711-024-00930-6.pdf
A genomic-based approach to redefine herd book information in two local cattle breeds. G. Schiavo, S. Bovo, F. Bertolini, A. Ribani, V. Taurisano, S. Dall'Olio, M. Bonacini, L. Fontanesi 2024-01-01 - - 4.01 Contributo in Atti di convegno -
A HIGH-DENSITY AND TIME DYNAMIC DISTRIBUTION MAP OF HONEY BEE MITOCHONDRIAL DNA LINEAGES COVERING THE ENTIRE ITALY Valeria Taurisano, Anisa Ribani, Dalal Sami, Kate Elise Johnson, Valerio Joe Utzeri, Samuele Bovo..., Giuseppina Schiavo, Luca Fontanesi 2024-01-01 - - 4.01 Contributo in Atti di convegno -
Applied genomics in dairy science: from animal breeding to dairy product authentication. Stefania Dall’Olio, Mohamad Ballan, Francesca Bertolini, Matteo Bolner, Samuele Bovo, Anisa Riban...i, Giuseppina Schiavo, Valeria Taurisano, Jacopo Vegni, Paolo Zambonelli, Luca Fontanesi 2024-01-01 - - 4.03 Poster -
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods null, null; Jain, Shantanu; Bakolitsa, Constantina; Brenner, Steven E.; Radivojac, Predrag; Moult..., John; Repo, Susanna; Hoskins, Roger A.; Andreoletti, Gaia; Barsky, Daniel; Chellapan, Ajithavalli; Chu, Hoyin; Dabbiru, Navya; Kollipara, Naveen K.; Ly, Melissa; Neumann, Andrew J.; Pal, Lipika R.; Odell, Eric; Pandey, Gaurav; Peters-Petrulewicz, Robin C.; Srinivasan, Rajgopal; Yee, Stephen F.; Yeleswarapu, Sri Jyothsna; Zuhl, Maya; Adebali, Ogun; Patra, Ayoti; Beer, Michael A.; Hosur, Raghavendra; Peng, Jian; Bernard, Brady M.; Berry, Michael; Dong, Shengcheng; Boyle, Alan P.; Adhikari, Aashish; Chen, Jingqi; Hu, Zhiqiang; Wang, Robert; Wang, Yaqiong; Miller, Maximilian; Wang, Yanran; Bromberg, Yana; Turina, Paola; Capriotti, Emidio; Han, James J.; Ozturk, Kivilcim; Carter, Hannah; Babbi, Giulia; Bovo, Samuele; Di Lena, Pietro; Martelli, Pier Luigi; Savojardo, Castrense; Casadio, Rita; Cline, Melissa S.; De Baets, Greet; Bonache, Sandra; Díez, Orland; Gutiérrez-Enríquez, Sara; Fernández, Alejandro; Montalban, Gemma; Ootes, Lars; Özkan, Selen; Padilla, Natàlia; Riera, Casandra; De la Cruz, Xavier; Diekhans, Mark; Huwe, Peter J.; Wei, Qiong; Xu, Qifang; Dunbrack, Roland L.; Gotea, Valer; Elnitski, Laura; Margolin, Gennady; Fariselli, Piero; Kulakovskiy, Ivan V.; Makeev, Vsevolod J.; Penzar, Dmitry D.; Vorontsov, Ilya E.; Favorov, Alexander V.; Forman, Julia R.; Hasenahuer, Marcia; Fornasari, Maria S.; Parisi, Gustavo; Avsec, Ziga; Çelik, Muhammed H.; Nguyen, Thi Yen Duong; Gagneur, Julien; Shi, Fang-Yuan; Edwards, Matthew D.; Guo, Yuchun; Tian, Kevin; Zeng, Haoyang; Gifford, David K.; Göke, Jonathan; Zaucha, Jan; Gough, Julian; Ritchie, Graham R. S.; Frankish, Adam; Mudge, Jonathan M.; Harrow, Jennifer; Young, Erin L.; Yu, Yao; Huff, Chad D.; Murakami, Katsuhiko; Nagai, Yoko; Imanishi, Tadashi; Mungall, Christopher J.; Jacobsen, Julius O. B.; Kim, Dongsup; Jeong, Chan-Seok; Jones, David T.; Li, Mulin Jun; Guthrie, Violeta Beleva; Bhattacharya, Rohit; Chen, Yun-Ching; Douville, Christopher; Fan, Jean; Kim, Dewey; Masica, David; Niknafs, Noushin; Sengupta, Sohini; Tokheim, Collin; Turner, Tychele N.; Yeo, Hui Ting Grace; Karchin, Rachel; Shin, Sunyoung; Welch, Rene; Keles, Sunduz; Li, Yue; Kellis, Manolis; Corbi-Verge, Carles; Strokach, Alexey V.; Kim, Philip M.; Klein, Teri E.; Mohan, Rahul; Sinnott-Armstrong, Nicholas A.; Wainberg, Michael; Kundaje, Anshul; Gonzaludo, Nina; Mak, Angel C. Y.; Chhibber, Aparna; Lam, Hugo Y. K.; Dahary, Dvir; Fishilevich, Simon; Lancet, Doron; Lee, Insuk; Bachman, Benjamin; Katsonis, Panagiotis; Lua, Rhonald C.; Wilson, Stephen J.; Lichtarge, Olivier; Bhat, Rajendra R.; Sundaram, Laksshman; Viswanath, Vivek; Bellazzi, Riccardo; Nicora, Giovanna; Rizzo, Ettore; Limongelli, Ivan; Mezlini, Aziz M.; Chang, Ray; Kim, Serra; Lai, Carmen; O’Connor, Robert; Topper, Scott; van den Akker, Jeroen; Zhou, Alicia Y.; Zimmer, Anjali D.; Mishne, Gilad; Bergquist, Timothy R.; Breese, Marcus R.; Guerrero, Rafael F.; Jiang, Yuxiang; Kiga, Nikki; Li, Biao; Mort, Matthew; Pagel, Kymberleigh A.; Pejaver, Vikas; Stamboulian, Moses H.; Thusberg, Janita; Mooney, Sean D.; Teerakulkittipong, Nuttinee; Cao, Chen; Kundu, Kunal; Yin, Yizhou; Yu, Chen-Hsin; Kleyman, Michael; Lin, Chiao-Feng; Stackpole, Mary; Mount, Stephen M.; Eraslan, Gökcen; Mueller, Nikola S.; Naito, Tatsuhiko; Rao, Aliz R.; Azaria, Johnathan R.; Brodie, Aharon; Ofran, Yanay; Garg, Aditi; Pal, Debnath; Hawkins-Hooker, Alex; Kenlay, Henry; Reid, John; Mucaki, Eliseos J.; Rogan, Peter K.; Schwarz, Jana M.; Searls, David B.; Lee, Gyu Rie; Seok, Chaok; Krämer, Andreas; Shah, Sohela; Huang, ChengLai V.; Kirsch, Jack F.; Shatsky, Maxim; Cao, Yue; Chen, Haoran; Karimi, Mostafa; Moronfoye, Oluwaseyi; Sun, Yuanfei; Shen, Yang; Shigeta, Ron; Ford, Colby T.; Nodzak, Conor; Uppal, Aneeta; Shi, Xinghua; Joseph, Thomas; Kotte, Sujatha; Rana, Sadhna; Rao, Aditya; Saipradeep, V. G.; Sivadasan, Naveen; Sunderam, Uma; Stanke, Mario; Su, Andrew; Adzhubey, Ivan; Jordan, Daniel M.; Sunyaev, Shamil; Rousseau, Frederic; Schymkowitz, Joost; Van Durme, Joost; Tavtigian, Sean V.; Carraro, Marco; Giollo, Manuel; Tosatto, Silvio C. E.; Adato, Orit; Carmel, Liran; Cohen, Noa E.; Fenesh, Tzila; Holtzer, Tamar; Juven-Gershon, Tamar; Unger, Ron; Niroula, Abhishek; Olatubosun, Ayodeji; Väliaho, Jouni; Yang, Yang; Vihinen, Mauno; Wahl, Mary E.; Chang, Billy; Chong, Ka Chun; Hu, Inchi; Sun, Rui; Wu, William Ka Kei; Xia, Xiaoxuan; Zee, Benny C.; Wang, Maggie H.; Wang, Meng; Wu, Chunlei; Lu, Yutong; Chen, Ken; Yang, Yuedong; Yates, Christopher M.; Kreimer, Anat; Yan, Zhongxia; Yosef, Nir; Zhao, Huying; Wei, Zhipeng; Yao, Zhaomin; Zhou, Fengfeng; Folkman, Lukas; Zhou, Yaoqi; Daneshjou, Roxana; Altman, Russ B.; Inoue, Fumitaka; Ahituv, Nadav; Arkin, Adam P.; Lovisa, Federica; Bonvini, Paolo; Bowdin, Sarah; Gianni, Stefano; Mantuano, Elide; Minicozzi, Velia; Novak, Leonore; Pasquo, Alessandra; Pastore, Annalisa; Petrosino, Maria; Puglisi, Rita; Toto, Angelo; Veneziano, Liana; Chiaraluce, Roberta; Ball, Mad P.; Bobe, Jason R.; Church, George M.; Consalvi, Valerio; Cooper, David N.; Buckley, Bethany A.; Sheridan, Molly B.; Cutting, Garry R.; Scaini, Maria Chiara; Cygan, Kamil J.; Fredericks, Alger M.; Glidden, David T.; Neil, Christopher; Rhine, Christy L.; Fairbrother, William G.; Alontaga, Aileen Y.; Fenton, Aron W.; Matreyek, Kenneth A.; Starita, Lea M.; Fowler, Douglas M.; Löscher, Britt-Sabina; Franke, Andre; Adamson, Scott I.; Graveley, Brenton R.; Gray, Joe W.; Malloy, Mary J.; Kane, John P.; Kousi, Maria; Katsanis, Nicholas; Schubach, Max; Kircher, Martin; Mak, Angel C. Y.; Tang, Paul L. F.; Kwok, Pui-Yan; Lathrop, Richard H.; Clark, Wyatt T.; Yu, Guoying K.; LeBowitz, Jonathan H.; Benedicenti, Francesco; Bettella, Elisa; Bigoni, Stefania; Cesca, Federica; Mammi, Isabella; Marino-Buslje, Cristina; Milani, Donatella; Peron, Angela; Polli, Roberta; Sartori, Stefano; Stanzial, Franco; Toldo, Irene; Turolla, Licia; Aspromonte, Maria C.; Bellini, Mariagrazia; Leonardi, Emanuela; Liu, Xiaoming; Marshall, Christian; McCombie, W. Richard; Elefanti, Lisa; Menin, Chiara; Meyn, M. Stephen; Murgia, Alessandra; Nadeau, Kari C. Y.; Neuhausen, Susan L.; Nussbaum, Robert L.; Pirooznia, Mehdi; Potash, James B.; Dimster-Denk, Dago F.; Rine, Jasper D.; Sanford, Jeremy R.; Snyder, Michael; Cote, Atina G.; Sun, Song; Verby, Marta W.; Weile, Jochen; Roth, Frederick P.; Tewhey, Ryan; Sabeti, Pardis C.; Campagna, Joan; Refaat, Marwan M.; Wojciak, Julianne; Grubb, Soren; Schmitt, Nicole; Shendure, Jay; Spurdle, Amanda B.; Stavropoulos, Dimitri J.; Walton, Nephi A.; Zandi, Peter P.; Ziv, Elad; Burke, Wylie; Chen, Flavia; Carr, Lawrence R.; Martinez, Selena; Paik, Jodi; Harris-Wai, Julie; Yarborough, Mark; Fullerton, Stephanie M.; Koenig, Barbara A.; McInnes, Gregory; Shigaki, Dustin; Chandonia, John-Marc; Furutsuki, Mabel; Kasak, Laura; Yu, Changhua; Chen, Rui; Friedberg, Iddo; Getz, Gad A.; Cong, Qian; Kinch, Lisa N.; Zhang, Jing; Grishin, Nick V.; Voskanian, Alin; Kann, Maricel G.; Tran, Elizabeth; Ioannidis, Nilah M.; Hunter, Jesse M.; Udani, Rupa; Cai, Binghuang; Morgan, Alexander A.; Sokolov, Artem; Stuart, Joshua M.; Minervini, Giovanni; Monzon, Alexander M.; Batzoglou, Serafim; Butte, Atul J.; Greenblatt, Marc S.; Hart, Reece K.; Hernandez, Ryan; Hubbard, Tim J. P.; Kahn, Scott; O’Donnell-Luria, Anne; Ng, Pauline C.; Shon, John; Veltman, Joris; Zook, Justin M. 2024-01-01 GENOME BIOLOGY - 1.01 Articolo in rivista CAGI flag 2024.pdf; 13059_2023_3113_MOESM1_ESM.docx; 13059_2023_3113_MOESM2_ESM.xls; 13059_2023_3113_MOESM3_ESM.xlsx; 13059_2023_3113_MOESM4_ESM.xls; 13059_2023_3113_MOESM5_ESM.xls; 13059_2023_3113_MOESM6_ESM.xls; 13059_2023_3113_MOESM8_ESM.docx; 13059_2023_3113_MOESM7_ESM.xls
Critical assessment of variant prioritization methods for rare disease diagnosis within the rare genomes project Stenton, Sarah L.; O'Leary, Melanie C.; Lemire, Gabrielle; VanNoy, Grace E.; DiTroia, Stephanie; ...Ganesh, Vijay S.; Groopman, Emily; O'Heir, Emily; Mangilog, Brian; Osei-Owusu, Ikeoluwa; Pais, Lynn S.; Serrano, Jillian; Singer-Berk, Moriel; Weisburd, Ben; Wilson, Michael W.; Austin-Tse, Christina; Abdelhakim, Marwa; Althagafi, Azza; Babbi, Giulia; Bellazzi, Riccardo; Bovo, Samuele; Carta, Maria Giulia; Casadio, Rita; Coenen, Pieter-Jan; De Paoli, Federica; Floris, Matteo; Gajapathy, Manavalan; Hoehndorf, Robert; Jacobsen, Julius O. B.; Joseph, Thomas; Kamandula, Akash; Katsonis, Panagiotis; Kint, Cyrielle; Lichtarge, Olivier; Limongelli, Ivan; Lu, Yulan; Magni, Paolo; Mamidi, Tarun Karthik Kumar; Martelli, Pier Luigi; Mulargia, Marta; Nicora, Giovanna; Nykamp, Keith; Pejaver, Vikas; Peng, Yisu; Pham, Thi Hong Cam; Podda, Maurizio S.; Rao, Aditya; Rizzo, Ettore; Saipradeep, Vangala G.; Savojardo, Castrense; Schols, Peter; Shen, Yang; Sivadasan, Naveen; Smedley, Damian; Soru, Dorian; Srinivasan, Rajgopal; Sun, Yuanfei; Sunderam, Uma; Tan, Wuwei; Tiwari, Naina; Wang, Xiao; Wang, Yaqiong; Williams, Amanda; Worthey, Elizabeth A.; Yin, Rujie; You, Yuning; Zeiberg, Daniel; Zucca, Susanna; Bakolitsa, Constantina; Brenner, Steven E.; Fullerton, Stephanie M.; Radivojac, Predrag; Rehm, Heidi L.; O'Donnell-Luria, Anne 2024-01-01 HUMAN GENOMICS - 1.01 Articolo in rivista Human Mutation - 2024- Stenton - Critical assessment of variant prioritization.pdf
Describing feed efficiency using metabolomic data in pigs F. Bertolini, S. Bovo, M. Bolner, G. Schiavo, M. Cappelloni, M. Gallo, L. Fontanesi 2024-01-01 - - 4.01 Contributo in Atti di convegno -
Dissecting production traits using metabolomics in pigs S. Bovo, G. Schiavo, F. Bertolini, M. Bolner, M. Cappelloni, M. Gallo, P. Zambonelli, S. Dall'Oli...o, L. Fontanesi 2024-01-01 - - 4.01 Contributo in Atti di convegno -
Distribution of honey bee mitochondrial DNA haplotypes in an Italian region where a legislative act is protecting the Apis mellifera ligustica subspecies Taurisano V.; Ribani A.; Sami D.; Nelson Johnson K.E.; Schiavo G.; Utzeri V.J.; Bovo S.; Fontanes...i L. 2024-01-01 SCIENTIFIC REPORTS - 1.01 Articolo in rivista s41598-024-71233-5.pdf; 41598_2024_71233_MOESM1_ESM.docx
DNA can make the difference: the two sides of the entomological authentication of the honey. Valeria Taurisano, Anisa Ribani, Samuele Bovo, Francesca Bertolini, Luca Fontanesi 2024-01-01 - - 4.03 Poster -
ENVIRONMENTAL DNA IN HONEY: GENOMIC TOOLS FOR ENTOMOLOGICAL AUTHENTICATION OF THIS PRODUCT. Valeria Taurisano, Anisa Ribani, Samuele Bovo, Francesca Bertolini, Valerio Joe Utzeri, Luca Font...anesi 2024-01-01 - - 4.03 Poster -
Exploring genomic selection opportunities in Italian local cattle breed E. Mancin, C. Sartori, A. Bagnato, M. G. Strillacci, F. Bernini, G. Schiavo, S. Bovo, L. Fontanes...i, R. Mantovani 2024-01-01 - - 4.01 Contributo in Atti di convegno -
Genome-wide association studies for diarrhoea outcomes identified genomic regions affecting resistance to a severe enteropathy in suckling rabbits Bovo S.; Ribani A.; Schiavo G.; Taurisano V.; Bertolini F.; Fornasini D.; Frabetti A.; Fontanesi L. 2024-01-01 JOURNAL OF ANIMAL BREEDING AND GENETICS - 1.01 Articolo in rivista J Animal Breeding Genetics - 2023 - Bovo - Genome‐wide association studies for diarrhoea outcomes identified genomic.pdf
GENOMICS APPLIED TO IMPROVE THE CONSERVATION AND MANAGEMENT OF THE MORA ROMAGNOLA PIG BREED Giuseppina Schiavo, Samuele Bovo, Anisa Ribani, Valeria Taurisano, Matteo Bolner, Stefania Dall’O...lio, Francesca Bertolini, Silvia Tinarelli, Manolo Cappelloni, Maurizio Gallo, Luca Fontanesi 2024-01-01 - - 4.03 Poster -
HIGH-THROUGHPUT PHENOTYPING VIA UNTARGETED GLOBAL METABOLOMICS REVEALS THE METABOLIC ROUTES UNDERLYING HEAT STRESS RESPONSE IN MORA ROMAGNOLA PIG Matteo Bolner , Samuele Bovo, Giuseppina Schiavo, Francesca Bertolini, Stefania Dall’Olio, Luca F...ontanesi 2024-01-01 - - 4.03 Poster -
How directional artificial selection has shaped the genome of Italian heavy pig breeds. J. Vegni, G. Schiavo, M. Ballan, S. Bovo, F. Bertolini, L. Buttazzoni, M. Gallo, L. Fontanesi 2024-01-01 - - 4.03 Poster -
Identification of population-informative markers from high-density genotyping data through combined feature selection and machine learning algorithms: Application to European autochthonous and cosmopolitan pig breeds Schiavo G.; Bertolini F.; Bovo S.; Galimberti G.; Munoz M.; Bozzi R.; Candek-Potokar M.; Ovilo C....; Fontanesi L. 2024-01-01 ANIMAL GENETICS - 1.01 Articolo in rivista Animal Genetics_2024_Schiavo_ML.pdf
Integrating genomic information in metabolomic networks to dissect molecular phenotypes in pigs S. Bovo, G. Schiavo, F. Bertolini, M. Bolner, M. Gallo, L. Fontanesi 2024-01-01 - - 4.01 Contributo in Atti di convegno -
Investigation of ABO Gene Variants across More Than 60 Pig Breeds and Populations and Other Suidae Species Using Whole-Genome Sequencing Datasets Bolner M.; Bertolini F.; Bovo S.; Schiavo G.; Fontanesi L. 2024-01-01 ANIMALS - 1.01 Articolo in rivista animals-14-00005-ABO.pdf
Meat genomics comes of age: applications over the whole value chains, from animal breeding to meat authentication. Luca Fontanesi, Mohamad Ballan, Francesca Bertolini, Matteo Bolner, Samuele Bovo, Stefania Dall’O...lio, Anisa Ribani, Giuseppina Schiavo, Valeria Taurisano, Jacopo Vegni, Paolo Zambonelli 2024-01-01 - - 4.03 Poster -