BOVO, SAMUELE
BOVO, SAMUELE
DIPARTIMENTO DI SCIENZE E TECNOLOGIE AGRO-ALIMENTARI
Ricercatori a tempo determinato
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods
2024 null, null; Jain, Shantanu; Bakolitsa, Constantina; Brenner, Steven E.; Radivojac, Predrag; Moult, John; Repo, Susanna; Hoskins, Roger A.; Andreoletti, Gaia; Barsky, Daniel; Chellapan, Ajithavalli; Chu, Hoyin; Dabbiru, Navya; Kollipara, Naveen K.; Ly, Melissa; Neumann, Andrew J.; Pal, Lipika R.; Odell, Eric; Pandey, Gaurav; Peters-Petrulewicz, Robin C.; Srinivasan, Rajgopal; Yee, Stephen F.; Yeleswarapu, Sri Jyothsna; Zuhl, Maya; Adebali, Ogun; Patra, Ayoti; Beer, Michael A.; Hosur, Raghavendra; Peng, Jian; Bernard, Brady M.; Berry, Michael; Dong, Shengcheng; Boyle, Alan P.; Adhikari, Aashish; Chen, Jingqi; Hu, Zhiqiang; Wang, Robert; Wang, Yaqiong; Miller, Maximilian; Wang, Yanran; Bromberg, Yana; Turina, Paola; Capriotti, Emidio; Han, James J.; Ozturk, Kivilcim; Carter, Hannah; Babbi, Giulia; Bovo, Samuele; Di Lena, Pietro; Martelli, Pier Luigi; Savojardo, Castrense; Casadio, Rita; Cline, Melissa S.; De Baets, Greet; Bonache, Sandra; Díez, Orland; Gutiérrez-Enríquez, Sara; Fernández, Alejandro; Montalban, Gemma; Ootes, Lars; Özkan, Selen; Padilla, Natàlia; Riera, Casandra; De la Cruz, Xavier; Diekhans, Mark; Huwe, Peter J.; Wei, Qiong; Xu, Qifang; Dunbrack, Roland L.; Gotea, Valer; Elnitski, Laura; Margolin, Gennady; Fariselli, Piero; Kulakovskiy, Ivan V.; Makeev, Vsevolod J.; Penzar, Dmitry D.; Vorontsov, Ilya E.; Favorov, Alexander V.; Forman, Julia R.; Hasenahuer, Marcia; Fornasari, Maria S.; Parisi, Gustavo; Avsec, Ziga; Çelik, Muhammed H.; Nguyen, Thi Yen Duong; Gagneur, Julien; Shi, Fang-Yuan; Edwards, Matthew D.; Guo, Yuchun; Tian, Kevin; Zeng, Haoyang; Gifford, David K.; Göke, Jonathan; Zaucha, Jan; Gough, Julian; Ritchie, Graham R. S.; Frankish, Adam; Mudge, Jonathan M.; Harrow, Jennifer; Young, Erin L.; Yu, Yao; Huff, Chad D.; Murakami, Katsuhiko; Nagai, Yoko; Imanishi, Tadashi; Mungall, Christopher J.; Jacobsen, Julius O. B.; Kim, Dongsup; Jeong, Chan-Seok; Jones, David T.; Li, Mulin Jun; Guthrie, Violeta Beleva; Bhattacharya, Rohit; Chen, Yun-Ching; Douville, Christopher; Fan, Jean; Kim, Dewey; Masica, David; Niknafs, Noushin; Sengupta, Sohini; Tokheim, Collin; Turner, Tychele N.; Yeo, Hui Ting Grace; Karchin, Rachel; Shin, Sunyoung; Welch, Rene; Keles, Sunduz; Li, Yue; Kellis, Manolis; Corbi-Verge, Carles; Strokach, Alexey V.; Kim, Philip M.; Klein, Teri E.; Mohan, Rahul; Sinnott-Armstrong, Nicholas A.; Wainberg, Michael; Kundaje, Anshul; Gonzaludo, Nina; Mak, Angel C. Y.; Chhibber, Aparna; Lam, Hugo Y. K.; Dahary, Dvir; Fishilevich, Simon; Lancet, Doron; Lee, Insuk; Bachman, Benjamin; Katsonis, Panagiotis; Lua, Rhonald C.; Wilson, Stephen J.; Lichtarge, Olivier; Bhat, Rajendra R.; Sundaram, Laksshman; Viswanath, Vivek; Bellazzi, Riccardo; Nicora, Giovanna; Rizzo, Ettore; Limongelli, Ivan; Mezlini, Aziz M.; Chang, Ray; Kim, Serra; Lai, Carmen; O’Connor, Robert; Topper, Scott; van den Akker, Jeroen; Zhou, Alicia Y.; Zimmer, Anjali D.; Mishne, Gilad; Bergquist, Timothy R.; Breese, Marcus R.; Guerrero, Rafael F.; Jiang, Yuxiang; Kiga, Nikki; Li, Biao; Mort, Matthew; Pagel, Kymberleigh A.; Pejaver, Vikas; Stamboulian, Moses H.; Thusberg, Janita; Mooney, Sean D.; Teerakulkittipong, Nuttinee; Cao, Chen; Kundu, Kunal; Yin, Yizhou; Yu, Chen-Hsin; Kleyman, Michael; Lin, Chiao-Feng; Stackpole, Mary; Mount, Stephen M.; Eraslan, Gökcen; Mueller, Nikola S.; Naito, Tatsuhiko; Rao, Aliz R.; Azaria, Johnathan R.; Brodie, Aharon; Ofran, Yanay; Garg, Aditi; Pal, Debnath; Hawkins-Hooker, Alex; Kenlay, Henry; Reid, John; Mucaki, Eliseos J.; Rogan, Peter K.; Schwarz, Jana M.; Searls, David B.; Lee, Gyu Rie; Seok, Chaok; Krämer, Andreas; Shah, Sohela; Huang, ChengLai V.; Kirsch, Jack F.; Shatsky, Maxim; Cao, Yue; Chen, Haoran; Karimi, Mostafa; Moronfoye, Oluwaseyi; Sun, Yuanfei; Shen, Yang; Shigeta, Ron; Ford, Colby T.; Nodzak, Conor; Uppal, Aneeta; Shi, Xinghua; Joseph, Thomas; Kotte, Sujatha; Rana, Sadhna; Rao, Aditya; Saipradeep, V. G.; Sivadasan, Naveen; Sunderam, Uma; Stanke, Mario; Su, Andrew; Adzhubey, Ivan; Jordan, Daniel M.; Sunyaev, Shamil; Rousseau, Frederic; Schymkowitz, Joost; Van Durme, Joost; Tavtigian, Sean V.; Carraro, Marco; Giollo, Manuel; Tosatto, Silvio C. E.; Adato, Orit; Carmel, Liran; Cohen, Noa E.; Fenesh, Tzila; Holtzer, Tamar; Juven-Gershon, Tamar; Unger, Ron; Niroula, Abhishek; Olatubosun, Ayodeji; Väliaho, Jouni; Yang, Yang; Vihinen, Mauno; Wahl, Mary E.; Chang, Billy; Chong, Ka Chun; Hu, Inchi; Sun, Rui; Wu, William Ka Kei; Xia, Xiaoxuan; Zee, Benny C.; Wang, Maggie H.; Wang, Meng; Wu, Chunlei; Lu, Yutong; Chen, Ken; Yang, Yuedong; Yates, Christopher M.; Kreimer, Anat; Yan, Zhongxia; Yosef, Nir; Zhao, Huying; Wei, Zhipeng; Yao, Zhaomin; Zhou, Fengfeng; Folkman, Lukas; Zhou, Yaoqi; Daneshjou, Roxana; Altman, Russ B.; Inoue, Fumitaka; Ahituv, Nadav; Arkin, Adam P.; Lovisa, Federica; Bonvini, Paolo; Bowdin, Sarah; Gianni, Stefano; Mantuano, Elide; Minicozzi, Velia; Novak, Leonore; Pasquo, Alessandra; Pastore, Annalisa; Petrosino, Maria; Puglisi, Rita; Toto, Angelo; Veneziano, Liana; Chiaraluce, Roberta; Ball, Mad P.; Bobe, Jason R.; Church, George M.; Consalvi, Valerio; Cooper, David N.; Buckley, Bethany A.; Sheridan, Molly B.; Cutting, Garry R.; Scaini, Maria Chiara; Cygan, Kamil J.; Fredericks, Alger M.; Glidden, David T.; Neil, Christopher; Rhine, Christy L.; Fairbrother, William G.; Alontaga, Aileen Y.; Fenton, Aron W.; Matreyek, Kenneth A.; Starita, Lea M.; Fowler, Douglas M.; Löscher, Britt-Sabina; Franke, Andre; Adamson, Scott I.; Graveley, Brenton R.; Gray, Joe W.; Malloy, Mary J.; Kane, John P.; Kousi, Maria; Katsanis, Nicholas; Schubach, Max; Kircher, Martin; Mak, Angel C. Y.; Tang, Paul L. F.; Kwok, Pui-Yan; Lathrop, Richard H.; Clark, Wyatt T.; Yu, Guoying K.; LeBowitz, Jonathan H.; Benedicenti, Francesco; Bettella, Elisa; Bigoni, Stefania; Cesca, Federica; Mammi, Isabella; Marino-Buslje, Cristina; Milani, Donatella; Peron, Angela; Polli, Roberta; Sartori, Stefano; Stanzial, Franco; Toldo, Irene; Turolla, Licia; Aspromonte, Maria C.; Bellini, Mariagrazia; Leonardi, Emanuela; Liu, Xiaoming; Marshall, Christian; McCombie, W. Richard; Elefanti, Lisa; Menin, Chiara; Meyn, M. Stephen; Murgia, Alessandra; Nadeau, Kari C. Y.; Neuhausen, Susan L.; Nussbaum, Robert L.; Pirooznia, Mehdi; Potash, James B.; Dimster-Denk, Dago F.; Rine, Jasper D.; Sanford, Jeremy R.; Snyder, Michael; Cote, Atina G.; Sun, Song; Verby, Marta W.; Weile, Jochen; Roth, Frederick P.; Tewhey, Ryan; Sabeti, Pardis C.; Campagna, Joan; Refaat, Marwan M.; Wojciak, Julianne; Grubb, Soren; Schmitt, Nicole; Shendure, Jay; Spurdle, Amanda B.; Stavropoulos, Dimitri J.; Walton, Nephi A.; Zandi, Peter P.; Ziv, Elad; Burke, Wylie; Chen, Flavia; Carr, Lawrence R.; Martinez, Selena; Paik, Jodi; Harris-Wai, Julie; Yarborough, Mark; Fullerton, Stephanie M.; Koenig, Barbara A.; McInnes, Gregory; Shigaki, Dustin; Chandonia, John-Marc; Furutsuki, Mabel; Kasak, Laura; Yu, Changhua; Chen, Rui; Friedberg, Iddo; Getz, Gad A.; Cong, Qian; Kinch, Lisa N.; Zhang, Jing; Grishin, Nick V.; Voskanian, Alin; Kann, Maricel G.; Tran, Elizabeth; Ioannidis, Nilah M.; Hunter, Jesse M.; Udani, Rupa; Cai, Binghuang; Morgan, Alexander A.; Sokolov, Artem; Stuart, Joshua M.; Minervini, Giovanni; Monzon, Alexander M.; Batzoglou, Serafim; Butte, Atul J.; Greenblatt, Marc S.; Hart, Reece K.; Hernandez, Ryan; Hubbard, Tim J. P.; Kahn, Scott; O’Donnell-Luria, Anne; Ng, Pauline C.; Shon, John; Veltman, Joris; Zook, Justin M.
Critical assessment of variant prioritization methods for rare disease diagnosis within the rare genomes project
2024 Stenton, Sarah L.; O'Leary, Melanie C.; Lemire, Gabrielle; VanNoy, Grace E.; DiTroia, Stephanie; Ganesh, Vijay S.; Groopman, Emily; O'Heir, Emily; Mangilog, Brian; Osei-Owusu, Ikeoluwa; Pais, Lynn S.; Serrano, Jillian; Singer-Berk, Moriel; Weisburd, Ben; Wilson, Michael W.; Austin-Tse, Christina; Abdelhakim, Marwa; Althagafi, Azza; Babbi, Giulia; Bellazzi, Riccardo; Bovo, Samuele; Carta, Maria Giulia; Casadio, Rita; Coenen, Pieter-Jan; De Paoli, Federica; Floris, Matteo; Gajapathy, Manavalan; Hoehndorf, Robert; Jacobsen, Julius O. B.; Joseph, Thomas; Kamandula, Akash; Katsonis, Panagiotis; Kint, Cyrielle; Lichtarge, Olivier; Limongelli, Ivan; Lu, Yulan; Magni, Paolo; Mamidi, Tarun Karthik Kumar; Martelli, Pier Luigi; Mulargia, Marta; Nicora, Giovanna; Nykamp, Keith; Pejaver, Vikas; Peng, Yisu; Pham, Thi Hong Cam; Podda, Maurizio S.; Rao, Aditya; Rizzo, Ettore; Saipradeep, Vangala G.; Savojardo, Castrense; Schols, Peter; Shen, Yang; Sivadasan, Naveen; Smedley, Damian; Soru, Dorian; Srinivasan, Rajgopal; Sun, Yuanfei; Sunderam, Uma; Tan, Wuwei; Tiwari, Naina; Wang, Xiao; Wang, Yaqiong; Williams, Amanda; Worthey, Elizabeth A.; Yin, Rujie; You, Yuning; Zeiberg, Daniel; Zucca, Susanna; Bakolitsa, Constantina; Brenner, Steven E.; Fullerton, Stephanie M.; Radivojac, Predrag; Rehm, Heidi L.; O'Donnell-Luria, Anne
Distribution of honey bee mitochondrial DNA haplotypes in an Italian region where a legislative act is protecting the Apis mellifera ligustica subspecies
2024 Taurisano V.; Ribani A.; Sami D.; Nelson Johnson K.E.; Schiavo G.; Utzeri V.J.; Bovo S.; Fontanesi L.
Genome-wide association studies for diarrhoea outcomes identified genomic regions affecting resistance to a severe enteropathy in suckling rabbits
2024 Bovo S.; Ribani A.; Schiavo G.; Taurisano V.; Bertolini F.; Fornasini D.; Frabetti A.; Fontanesi L.
Identification of population-informative markers from high-density genotyping data through combined feature selection and machine learning algorithms: Application to European autochthonous and cosmopolitan pig breeds
2024 Schiavo G.; Bertolini F.; Bovo S.; Galimberti G.; Munoz M.; Bozzi R.; Candek-Potokar M.; Ovilo C.; Fontanesi L.
Investigation of ABO Gene Variants across More Than 60 Pig Breeds and Populations and Other Suidae Species Using Whole-Genome Sequencing Datasets
2024 Bolner M.; Bertolini F.; Bovo S.; Schiavo G.; Fontanesi L.
Persistence of autozygosity in crossbreds between autochthonous and cosmopolitan breeds of swine: a simulation study
2024 Fabbri, Maria Chiara; Lozada-Soto, Emmanuel; Tiezzi, Francesco; Čandek-Potokar, Marjeta; Bovo, Samuele; Schiavo, Giuseppina; Fontanesi, Luca; Muñoz, Maria; Ovilo, Cristina; Bozzi, Riccardo
Uncovering genetic parameters and environmental influences on fertility, milk production, and quality in autochthonous Reggiana cattle
2024 Mancin E.; Gomez Proto G.; Tuliozi B.; Schiavo G.; Bovo S.; Fontanesi L.; Sartori C.; Mantovani R.
A meta-analysis of genetic and phenotypic diversity of European local pig breeds reveals genomic regions associated with breed differentiation for production traits
2023 Poklukar, Klavdija; Mestre, Camille; Škrlep, Martin; Čandek-Potokar, Marjeta; Ovilo, Cristina; Fontanesi, Luca; Riquet, Juliette; Bovo, Samuele; Schiavo, Giuseppina; Ribani, Anisa; Muñoz, Maria; Gallo, Maurizio; Bozzi, Ricardo; Charneca, Rui; Quintanilla, Raquel; Kušec, Goran; Mercat, Marie-José; Zimmer, Christoph; Razmaite, Violeta; Araujo, Jose P; Radović, Čedomir; Savić, Radomir; Karolyi, Danijel; Servin, Bertrand
Ancient DNA re-opens the question of the phylogenetic position of the Sardinian pika Prolagus sardus (Wagner, 1829), an extinct lagomorph
2023 Utzeri, Valerio Joe; Cilli, Elisabetta; Fontani, Francesco; Zoboli, Daniel; Orsini, Massimiliano; Ribani, Anisa; Latorre, Adriana; Lissovsky, Andrey A; Pillola, Gian Luigi; Bovo, Samuele; Gruppioni, Giorgio; Luiselli, Donata; Fontanesi, Luca
Combined targeted and untargeted metabolomics in pigs coupled with genomic information: Towards a comprehensive genetic characterization of the pig metabolome
2023 S. Bovo, G. Schiavo, F. Fanelli, A. Ribani, F. Bertolini, M. Gallo, G. Galimberti, Stefania Dall’Olio, PL. Martelli, R. Casadio, U. Pagotto, L. Fontanesi
Comparative targeted metabolomic profiles of porcine plasma and serum
2023 Bovo, Samuele; Schiavo, Giuseppina; Galimberti, Giuliano; Fanelli, Flaminia; Bertolini, Francesca; Dall'Olio, Stefania; Pagotto, Uberto; Fontanesi, Luca
Population genomic structures and signatures of selection define the genetic uniqueness of several fancy and meat rabbit breeds
2023 Ballan M.; Bovo S.; Bertolini F.; Schiavo G.; Schiavitto M.; Negrini R.; Fontanesi L.
Signatures of Admixture and Genetic Uniqueness in the Autochthonous Greek Black Pig Breed Deduced from Gene Polymorphisms Affecting Domestication-Derived Traits
2023 Ribani, Anisa; Taurisano, Valeria; Karatosidi, Despoina; Schiavo, Giuseppina; Bovo, Samuele; Bertolini, Francesca; Fontanesi, Luca
Whole genome sequencing identifies candidate genes and mutations that can explain diluted and other colour varieties of domestic canaries (Serinus canaria)
2023 Bovo S.; Ribani A.; Utzeri V.J.; Taurisano V.; Bertarini G.; Fontanesi L.
Whole Genome Sequencing Provides Information on the Genomic Architecture and Diversity of Cultivated Gilthead Seabream (Sparus aurata) Broodstock Nuclei
2023 Bertolini F.; Ribani A.; Capoccioni F.; Buttazzoni L.; Bovo S.; Schiavo G.; Caggiano M.; Rothschild M.F.; Fontanesi L.
Whole metabolome and genome analyses provide information on the genetic variability affecting the metabolism in pigs
2023 Samuele Bovo,Giuseppina Schiavo, Flaminia Fanelli, Anisa Ribani, Francesca Bertolini, Maurizio Gallo, Giuliano Galimberti, Stefania Dall'olio, Pier Luigi Martelli, Rita Casadio, Uberto Pagatto, Luca Fontanesi
A comprehensive overview of mitochondrial DNA insertions in the nuclear genome of the pig
2022 M. Bolner, M. Ballan, S. Bovo, G. Schiavo, L. Fontanesi
A genotyping by sequencing approach can disclose Apis mellifera population genomic information contained in honey environmental DNA
2022 Bovo, Samuele; Utzeri, Valerio Joe; Ribani, Anisa; Taurisano, Valeria; Schiavo, Giuseppina; Fontanesi, Luca
Admixture and breed traceability in European indigenous pig breeds and wild boar using genome-wide SNP data
2022 Dadousis C.; Munoz M.; Ovilo C.; Fabbri M.C.; Araujo J.P.; Bovo S.; Potokar M.C.; Charneca R.; Crovetti A.; Gallo M.; Garcia-Casco J.M.; Karolyi D.; Kusec G.; Martins J.M.; Mercat M.-J.; Pugliese C.; Quintanilla R.; Radovic C.; Razmaite V.; Ribani A.; Riquet J.; Savic R.; Schiavo G.; Skrlep M.; Tinarelli S.; Usai G.; Zimmer C.; Fontanesi L.; Bozzi R.
Titolo | Autore(i) | Anno | Periodico | Editore | Tipo | File |
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CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods | null, null; Jain, Shantanu; Bakolitsa, Constantina; Brenner, Steven E.; Radivojac, Predrag; Moult..., John; Repo, Susanna; Hoskins, Roger A.; Andreoletti, Gaia; Barsky, Daniel; Chellapan, Ajithavalli; Chu, Hoyin; Dabbiru, Navya; Kollipara, Naveen K.; Ly, Melissa; Neumann, Andrew J.; Pal, Lipika R.; Odell, Eric; Pandey, Gaurav; Peters-Petrulewicz, Robin C.; Srinivasan, Rajgopal; Yee, Stephen F.; Yeleswarapu, Sri Jyothsna; Zuhl, Maya; Adebali, Ogun; Patra, Ayoti; Beer, Michael A.; Hosur, Raghavendra; Peng, Jian; Bernard, Brady M.; Berry, Michael; Dong, Shengcheng; Boyle, Alan P.; Adhikari, Aashish; Chen, Jingqi; Hu, Zhiqiang; Wang, Robert; Wang, Yaqiong; Miller, Maximilian; Wang, Yanran; Bromberg, Yana; Turina, Paola; Capriotti, Emidio; Han, James J.; Ozturk, Kivilcim; Carter, Hannah; Babbi, Giulia; Bovo, Samuele; Di Lena, Pietro; Martelli, Pier Luigi; Savojardo, Castrense; Casadio, Rita; Cline, Melissa S.; De Baets, Greet; Bonache, Sandra; Díez, Orland; Gutiérrez-Enríquez, Sara; Fernández, Alejandro; Montalban, Gemma; Ootes, Lars; Özkan, Selen; Padilla, Natàlia; Riera, Casandra; De la Cruz, Xavier; Diekhans, Mark; Huwe, Peter J.; Wei, Qiong; Xu, Qifang; Dunbrack, Roland L.; Gotea, Valer; Elnitski, Laura; Margolin, Gennady; Fariselli, Piero; Kulakovskiy, Ivan V.; Makeev, Vsevolod J.; Penzar, Dmitry D.; Vorontsov, Ilya E.; Favorov, Alexander V.; Forman, Julia R.; Hasenahuer, Marcia; Fornasari, Maria S.; Parisi, Gustavo; Avsec, Ziga; Çelik, Muhammed H.; Nguyen, Thi Yen Duong; Gagneur, Julien; Shi, Fang-Yuan; Edwards, Matthew D.; Guo, Yuchun; Tian, Kevin; Zeng, Haoyang; Gifford, David K.; Göke, Jonathan; Zaucha, Jan; Gough, Julian; Ritchie, Graham R. S.; Frankish, Adam; Mudge, Jonathan M.; Harrow, Jennifer; Young, Erin L.; Yu, Yao; Huff, Chad D.; Murakami, Katsuhiko; Nagai, Yoko; Imanishi, Tadashi; Mungall, Christopher J.; Jacobsen, Julius O. B.; Kim, Dongsup; Jeong, Chan-Seok; Jones, David T.; Li, Mulin Jun; Guthrie, Violeta Beleva; Bhattacharya, Rohit; Chen, Yun-Ching; Douville, Christopher; Fan, Jean; Kim, Dewey; Masica, David; Niknafs, Noushin; Sengupta, Sohini; Tokheim, Collin; Turner, Tychele N.; Yeo, Hui Ting Grace; Karchin, Rachel; Shin, Sunyoung; Welch, Rene; Keles, Sunduz; Li, Yue; Kellis, Manolis; Corbi-Verge, Carles; Strokach, Alexey V.; Kim, Philip M.; Klein, Teri E.; Mohan, Rahul; Sinnott-Armstrong, Nicholas A.; Wainberg, Michael; Kundaje, Anshul; Gonzaludo, Nina; Mak, Angel C. Y.; Chhibber, Aparna; Lam, Hugo Y. K.; Dahary, Dvir; Fishilevich, Simon; Lancet, Doron; Lee, Insuk; Bachman, Benjamin; Katsonis, Panagiotis; Lua, Rhonald C.; Wilson, Stephen J.; Lichtarge, Olivier; Bhat, Rajendra R.; Sundaram, Laksshman; Viswanath, Vivek; Bellazzi, Riccardo; Nicora, Giovanna; Rizzo, Ettore; Limongelli, Ivan; Mezlini, Aziz M.; Chang, Ray; Kim, Serra; Lai, Carmen; O’Connor, Robert; Topper, Scott; van den Akker, Jeroen; Zhou, Alicia Y.; Zimmer, Anjali D.; Mishne, Gilad; Bergquist, Timothy R.; Breese, Marcus R.; Guerrero, Rafael F.; Jiang, Yuxiang; Kiga, Nikki; Li, Biao; Mort, Matthew; Pagel, Kymberleigh A.; Pejaver, Vikas; Stamboulian, Moses H.; Thusberg, Janita; Mooney, Sean D.; Teerakulkittipong, Nuttinee; Cao, Chen; Kundu, Kunal; Yin, Yizhou; Yu, Chen-Hsin; Kleyman, Michael; Lin, Chiao-Feng; Stackpole, Mary; Mount, Stephen M.; Eraslan, Gökcen; Mueller, Nikola S.; Naito, Tatsuhiko; Rao, Aliz R.; Azaria, Johnathan R.; Brodie, Aharon; Ofran, Yanay; Garg, Aditi; Pal, Debnath; Hawkins-Hooker, Alex; Kenlay, Henry; Reid, John; Mucaki, Eliseos J.; Rogan, Peter K.; Schwarz, Jana M.; Searls, David B.; Lee, Gyu Rie; Seok, Chaok; Krämer, Andreas; Shah, Sohela; Huang, ChengLai V.; Kirsch, Jack F.; Shatsky, Maxim; Cao, Yue; Chen, Haoran; Karimi, Mostafa; Moronfoye, Oluwaseyi; Sun, Yuanfei; Shen, Yang; Shigeta, Ron; Ford, Colby T.; Nodzak, Conor; Uppal, Aneeta; Shi, Xinghua; Joseph, Thomas; Kotte, Sujatha; Rana, Sadhna; Rao, Aditya; Saipradeep, V. G.; Sivadasan, Naveen; Sunderam, Uma; Stanke, Mario; Su, Andrew; Adzhubey, Ivan; Jordan, Daniel M.; Sunyaev, Shamil; Rousseau, Frederic; Schymkowitz, Joost; Van Durme, Joost; Tavtigian, Sean V.; Carraro, Marco; Giollo, Manuel; Tosatto, Silvio C. E.; Adato, Orit; Carmel, Liran; Cohen, Noa E.; Fenesh, Tzila; Holtzer, Tamar; Juven-Gershon, Tamar; Unger, Ron; Niroula, Abhishek; Olatubosun, Ayodeji; Väliaho, Jouni; Yang, Yang; Vihinen, Mauno; Wahl, Mary E.; Chang, Billy; Chong, Ka Chun; Hu, Inchi; Sun, Rui; Wu, William Ka Kei; Xia, Xiaoxuan; Zee, Benny C.; Wang, Maggie H.; Wang, Meng; Wu, Chunlei; Lu, Yutong; Chen, Ken; Yang, Yuedong; Yates, Christopher M.; Kreimer, Anat; Yan, Zhongxia; Yosef, Nir; Zhao, Huying; Wei, Zhipeng; Yao, Zhaomin; Zhou, Fengfeng; Folkman, Lukas; Zhou, Yaoqi; Daneshjou, Roxana; Altman, Russ B.; Inoue, Fumitaka; Ahituv, Nadav; Arkin, Adam P.; Lovisa, Federica; Bonvini, Paolo; Bowdin, Sarah; Gianni, Stefano; Mantuano, Elide; Minicozzi, Velia; Novak, Leonore; Pasquo, Alessandra; Pastore, Annalisa; Petrosino, Maria; Puglisi, Rita; Toto, Angelo; Veneziano, Liana; Chiaraluce, Roberta; Ball, Mad P.; Bobe, Jason R.; Church, George M.; Consalvi, Valerio; Cooper, David N.; Buckley, Bethany A.; Sheridan, Molly B.; Cutting, Garry R.; Scaini, Maria Chiara; Cygan, Kamil J.; Fredericks, Alger M.; Glidden, David T.; Neil, Christopher; Rhine, Christy L.; Fairbrother, William G.; Alontaga, Aileen Y.; Fenton, Aron W.; Matreyek, Kenneth A.; Starita, Lea M.; Fowler, Douglas M.; Löscher, Britt-Sabina; Franke, Andre; Adamson, Scott I.; Graveley, Brenton R.; Gray, Joe W.; Malloy, Mary J.; Kane, John P.; Kousi, Maria; Katsanis, Nicholas; Schubach, Max; Kircher, Martin; Mak, Angel C. Y.; Tang, Paul L. F.; Kwok, Pui-Yan; Lathrop, Richard H.; Clark, Wyatt T.; Yu, Guoying K.; LeBowitz, Jonathan H.; Benedicenti, Francesco; Bettella, Elisa; Bigoni, Stefania; Cesca, Federica; Mammi, Isabella; Marino-Buslje, Cristina; Milani, Donatella; Peron, Angela; Polli, Roberta; Sartori, Stefano; Stanzial, Franco; Toldo, Irene; Turolla, Licia; Aspromonte, Maria C.; Bellini, Mariagrazia; Leonardi, Emanuela; Liu, Xiaoming; Marshall, Christian; McCombie, W. Richard; Elefanti, Lisa; Menin, Chiara; Meyn, M. Stephen; Murgia, Alessandra; Nadeau, Kari C. Y.; Neuhausen, Susan L.; Nussbaum, Robert L.; Pirooznia, Mehdi; Potash, James B.; Dimster-Denk, Dago F.; Rine, Jasper D.; Sanford, Jeremy R.; Snyder, Michael; Cote, Atina G.; Sun, Song; Verby, Marta W.; Weile, Jochen; Roth, Frederick P.; Tewhey, Ryan; Sabeti, Pardis C.; Campagna, Joan; Refaat, Marwan M.; Wojciak, Julianne; Grubb, Soren; Schmitt, Nicole; Shendure, Jay; Spurdle, Amanda B.; Stavropoulos, Dimitri J.; Walton, Nephi A.; Zandi, Peter P.; Ziv, Elad; Burke, Wylie; Chen, Flavia; Carr, Lawrence R.; Martinez, Selena; Paik, Jodi; Harris-Wai, Julie; Yarborough, Mark; Fullerton, Stephanie M.; Koenig, Barbara A.; McInnes, Gregory; Shigaki, Dustin; Chandonia, John-Marc; Furutsuki, Mabel; Kasak, Laura; Yu, Changhua; Chen, Rui; Friedberg, Iddo; Getz, Gad A.; Cong, Qian; Kinch, Lisa N.; Zhang, Jing; Grishin, Nick V.; Voskanian, Alin; Kann, Maricel G.; Tran, Elizabeth; Ioannidis, Nilah M.; Hunter, Jesse M.; Udani, Rupa; Cai, Binghuang; Morgan, Alexander A.; Sokolov, Artem; Stuart, Joshua M.; Minervini, Giovanni; Monzon, Alexander M.; Batzoglou, Serafim; Butte, Atul J.; Greenblatt, Marc S.; Hart, Reece K.; Hernandez, Ryan; Hubbard, Tim J. P.; Kahn, Scott; O’Donnell-Luria, Anne; Ng, Pauline C.; Shon, John; Veltman, Joris; Zook, Justin M. | 2024-01-01 | GENOME BIOLOGY | - | 1.01 Articolo in rivista | CAGI flag 2024.pdf; 13059_2023_3113_MOESM1_ESM.docx; 13059_2023_3113_MOESM2_ESM.xls; 13059_2023_3113_MOESM3_ESM.xlsx; 13059_2023_3113_MOESM4_ESM.xls; 13059_2023_3113_MOESM5_ESM.xls; 13059_2023_3113_MOESM6_ESM.xls; 13059_2023_3113_MOESM8_ESM.docx; 13059_2023_3113_MOESM7_ESM.xls |
Critical assessment of variant prioritization methods for rare disease diagnosis within the rare genomes project | Stenton, Sarah L.; O'Leary, Melanie C.; Lemire, Gabrielle; VanNoy, Grace E.; DiTroia, Stephanie; ...Ganesh, Vijay S.; Groopman, Emily; O'Heir, Emily; Mangilog, Brian; Osei-Owusu, Ikeoluwa; Pais, Lynn S.; Serrano, Jillian; Singer-Berk, Moriel; Weisburd, Ben; Wilson, Michael W.; Austin-Tse, Christina; Abdelhakim, Marwa; Althagafi, Azza; Babbi, Giulia; Bellazzi, Riccardo; Bovo, Samuele; Carta, Maria Giulia; Casadio, Rita; Coenen, Pieter-Jan; De Paoli, Federica; Floris, Matteo; Gajapathy, Manavalan; Hoehndorf, Robert; Jacobsen, Julius O. B.; Joseph, Thomas; Kamandula, Akash; Katsonis, Panagiotis; Kint, Cyrielle; Lichtarge, Olivier; Limongelli, Ivan; Lu, Yulan; Magni, Paolo; Mamidi, Tarun Karthik Kumar; Martelli, Pier Luigi; Mulargia, Marta; Nicora, Giovanna; Nykamp, Keith; Pejaver, Vikas; Peng, Yisu; Pham, Thi Hong Cam; Podda, Maurizio S.; Rao, Aditya; Rizzo, Ettore; Saipradeep, Vangala G.; Savojardo, Castrense; Schols, Peter; Shen, Yang; Sivadasan, Naveen; Smedley, Damian; Soru, Dorian; Srinivasan, Rajgopal; Sun, Yuanfei; Sunderam, Uma; Tan, Wuwei; Tiwari, Naina; Wang, Xiao; Wang, Yaqiong; Williams, Amanda; Worthey, Elizabeth A.; Yin, Rujie; You, Yuning; Zeiberg, Daniel; Zucca, Susanna; Bakolitsa, Constantina; Brenner, Steven E.; Fullerton, Stephanie M.; Radivojac, Predrag; Rehm, Heidi L.; O'Donnell-Luria, Anne | 2024-01-01 | HUMAN GENOMICS | - | 1.01 Articolo in rivista | Human Mutation - 2024- Stenton - Critical assessment of variant prioritization.pdf |
Distribution of honey bee mitochondrial DNA haplotypes in an Italian region where a legislative act is protecting the Apis mellifera ligustica subspecies | Taurisano V.; Ribani A.; Sami D.; Nelson Johnson K.E.; Schiavo G.; Utzeri V.J.; Bovo S.; Fontanes...i L. | 2024-01-01 | SCIENTIFIC REPORTS | - | 1.01 Articolo in rivista | s41598-024-71233-5.pdf; 41598_2024_71233_MOESM1_ESM.docx |
Genome-wide association studies for diarrhoea outcomes identified genomic regions affecting resistance to a severe enteropathy in suckling rabbits | Bovo S.; Ribani A.; Schiavo G.; Taurisano V.; Bertolini F.; Fornasini D.; Frabetti A.; Fontanesi L. | 2024-01-01 | JOURNAL OF ANIMAL BREEDING AND GENETICS | - | 1.01 Articolo in rivista | J Animal Breeding Genetics - 2023 - Bovo - Genome‐wide association studies for diarrhoea outcomes identified genomic.pdf |
Identification of population-informative markers from high-density genotyping data through combined feature selection and machine learning algorithms: Application to European autochthonous and cosmopolitan pig breeds | Schiavo G.; Bertolini F.; Bovo S.; Galimberti G.; Munoz M.; Bozzi R.; Candek-Potokar M.; Ovilo C....; Fontanesi L. | 2024-01-01 | ANIMAL GENETICS | - | 1.01 Articolo in rivista | Animal Genetics_2024_Schiavo_ML.pdf |
Investigation of ABO Gene Variants across More Than 60 Pig Breeds and Populations and Other Suidae Species Using Whole-Genome Sequencing Datasets | Bolner M.; Bertolini F.; Bovo S.; Schiavo G.; Fontanesi L. | 2024-01-01 | ANIMALS | - | 1.01 Articolo in rivista | animals-14-00005-ABO.pdf |
Persistence of autozygosity in crossbreds between autochthonous and cosmopolitan breeds of swine: a simulation study | Fabbri, Maria Chiara; Lozada-Soto, Emmanuel; Tiezzi, Francesco; Čandek-Potokar, Marjeta; Bovo, Sa...muele; Schiavo, Giuseppina; Fontanesi, Luca; Muñoz, Maria; Ovilo, Cristina; Bozzi, Riccardo | 2024-01-01 | ANIMAL | - | 1.01 Articolo in rivista | 1-s2.0-S1751731123003877-main.pdf; Persistence suppl.pdf |
Uncovering genetic parameters and environmental influences on fertility, milk production, and quality in autochthonous Reggiana cattle | Mancin E.; Gomez Proto G.; Tuliozi B.; Schiavo G.; Bovo S.; Fontanesi L.; Sartori C.; Mantovani R. | 2024-01-01 | JOURNAL OF DAIRY SCIENCE | - | 1.01 Articolo in rivista | PIIS0022030223006446.pdf |
A meta-analysis of genetic and phenotypic diversity of European local pig breeds reveals genomic regions associated with breed differentiation for production traits | Poklukar, Klavdija; Mestre, Camille; Škrlep, Martin; Čandek-Potokar, Marjeta; Ovilo, Cristina; Fo...ntanesi, Luca; Riquet, Juliette; Bovo, Samuele; Schiavo, Giuseppina; Ribani, Anisa; Muñoz, Maria; Gallo, Maurizio; Bozzi, Ricardo; Charneca, Rui; Quintanilla, Raquel; Kušec, Goran; Mercat, Marie-José; Zimmer, Christoph; Razmaite, Violeta; Araujo, Jose P; Radović, Čedomir; Savić, Radomir; Karolyi, Danijel; Servin, Bertrand | 2023-01-01 | GENETICS SELECTION EVOLUTION | - | 1.01 Articolo in rivista | s12711-023-00858-3.pdf |
Ancient DNA re-opens the question of the phylogenetic position of the Sardinian pika Prolagus sardus (Wagner, 1829), an extinct lagomorph | Utzeri, Valerio Joe; Cilli, Elisabetta; Fontani, Francesco; Zoboli, Daniel; Orsini, Massimiliano;... Ribani, Anisa; Latorre, Adriana; Lissovsky, Andrey A; Pillola, Gian Luigi; Bovo, Samuele; Gruppioni, Giorgio; Luiselli, Donata; Fontanesi, Luca | 2023-01-01 | SCIENTIFIC REPORTS | - | 1.01 Articolo in rivista | Utzeri 2023 prolagus.pdf |
Combined targeted and untargeted metabolomics in pigs coupled with genomic information: Towards a comprehensive genetic characterization of the pig metabolome |
S. Bovo, G. Schiavo, F. Fanelli, A. Ribani, F. Bertolini, M. Gallo, G. Galimberti, Stefani...a Dall’Olio, PL. Martelli, R. Casadio, U. Pagotto, L. Fontanesi |
2023-01-01 | - | - | 4.01 Contributo in Atti di convegno | - |
Comparative targeted metabolomic profiles of porcine plasma and serum | Bovo, Samuele; Schiavo, Giuseppina; Galimberti, Giuliano; Fanelli, Flaminia; Bertolini, Francesca...; Dall'Olio, Stefania; Pagotto, Uberto; Fontanesi, Luca | 2023-01-01 | ANIMAL | - | 1.01 Articolo in rivista | 1-s2.0-S1751731123003464-main.pdf |
Population genomic structures and signatures of selection define the genetic uniqueness of several fancy and meat rabbit breeds | Ballan M.; Bovo S.; Bertolini F.; Schiavo G.; Schiavitto M.; Negrini R.; Fontanesi L. | 2023-01-01 | JOURNAL OF ANIMAL BREEDING AND GENETICS | - | 1.01 Articolo in rivista | PMID37435689.pdf |
Signatures of Admixture and Genetic Uniqueness in the Autochthonous Greek Black Pig Breed Deduced from Gene Polymorphisms Affecting Domestication-Derived Traits | Ribani, Anisa; Taurisano, Valeria; Karatosidi, Despoina; Schiavo, Giuseppina; Bovo, Samuele; Bert...olini, Francesca; Fontanesi, Luca | 2023-01-01 | ANIMALS | - | 1.01 Articolo in rivista | animals-13-01763.pdf |
Whole genome sequencing identifies candidate genes and mutations that can explain diluted and other colour varieties of domestic canaries (Serinus canaria) | Bovo S.; Ribani A.; Utzeri V.J.; Taurisano V.; Bertarini G.; Fontanesi L. | 2023-01-01 | ANIMAL GENETICS | - | 1.01 Articolo in rivista | Serinus_canaria.pdf |
Whole Genome Sequencing Provides Information on the Genomic Architecture and Diversity of Cultivated Gilthead Seabream (Sparus aurata) Broodstock Nuclei | Bertolini F.; Ribani A.; Capoccioni F.; Buttazzoni L.; Bovo S.; Schiavo G.; Caggiano M.; Rothschi...ld M.F.; Fontanesi L. | 2023-01-01 | GENES | - | 1.01 Articolo in rivista | genes-14-00839-v2.pdf |
Whole metabolome and genome analyses provide information on the genetic variability affecting the metabolism in pigs | Samuele Bovo,Giuseppina Schiavo, Flaminia Fanelli, Anisa Ribani, Francesca Bertolini, Maurizio Ga...llo, Giuliano Galimberti, Stefania Dall'olio, Pier Luigi Martelli, Rita Casadio, Uberto Pagatto, Luca Fontanesi | 2023-01-01 | ITALIAN JOURNAL OF ANIMAL SCIENCE | - | 4.01 Contributo in Atti di convegno | - |
A comprehensive overview of mitochondrial DNA insertions in the nuclear genome of the pig | M. Bolner, M. Ballan, S. Bovo, G. Schiavo, L. Fontanesi | 2022-01-01 | - | - | 4.01 Contributo in Atti di convegno | - |
A genotyping by sequencing approach can disclose Apis mellifera population genomic information contained in honey environmental DNA | Bovo, Samuele; Utzeri, Valerio Joe; Ribani, Anisa; Taurisano, Valeria; Schiavo, Giuseppina; Fonta...nesi, Luca | 2022-01-01 | SCIENTIFIC REPORTS | - | 1.01 Articolo in rivista | s41598-022-24101-z.pdf |
Admixture and breed traceability in European indigenous pig breeds and wild boar using genome-wide SNP data | Dadousis C.; Munoz M.; Ovilo C.; Fabbri M.C.; Araujo J.P.; Bovo S.; Potokar M.C.; Charneca R.; Cr...ovetti A.; Gallo M.; Garcia-Casco J.M.; Karolyi D.; Kusec G.; Martins J.M.; Mercat M.-J.; Pugliese C.; Quintanilla R.; Radovic C.; Razmaite V.; Ribani A.; Riquet J.; Savic R.; Schiavo G.; Skrlep M.; Tinarelli S.; Usai G.; Zimmer C.; Fontanesi L.; Bozzi R. | 2022-01-01 | SCIENTIFIC REPORTS | - | 1.01 Articolo in rivista | s41598-022-10698-8.pdf |