GIORGI, FEDERICO MANUEL
GIORGI, FEDERICO MANUEL
DIPARTIMENTO DI FARMACIA E BIOTECNOLOGIE
Docenti di ruolo di IIa fascia
Giorgi Federico; Giorgi F. M.; Giorgi F.; Federico M. Giorgi; Federico Giorgi; F. M. Giorgi
A CLK3-HMGA2 Alternative Splicing Axis Impacts Human Hematopoietic Stem Cell Molecular Identity throughout Development
2018 Cesana, Marcella; Guo, Michael H.; Cacchiarelli, Davide; Wahlster, Lara; Barragan, Jessica; Doulatov, Sergei; Vo, Linda T.; Salvatori, Beatrice; Trapnell, Cole; Clement, Kendell; Cahan, Patrick; Tsanov, Kaloyan M.; Sousa, Patricia M.; Tazon-Vega, Barbara; Bolondi, Adriano; Giorgi, Federico M.; Califano, Andrea; Rinn, John L.; Meissner, Alexander; Hirschhorn, Joel N.; Daley, George Q.
A g316a polymorphism in the ornithine decarboxylase gene promoter modulates mycn‐driven childhood neuroblastoma
2021 Gamble L.D.; Purgato S.; Henderson M.J.; Di Giacomo S.; Russell A.J.; Pigini P.; Murray J.; Valli E.; Milazzo G.; Giorgi F.M.; Cowley M.; Ashton L.J.; Bhalshankar J.; Schleiermacher G.; Rihani A.; Van Maerken T.; Vandesompele J.; Speleman F.; Versteeg R.; Koster J.; Eggert A.; Noguera R.; Stallings R.L.; Tonini G.P.; Fong K.; Vaksman Z.; Diskin S.J.; Maris J.M.; London W.B.; Marshall G.M.; Ziegler D.S.; Hogarty M.D.; Perini G.; Norris M.D.; Haber M.
A history of heart failure is an independent risk factor for death in patients admitted with coronavirus 19 disease
2021 Castagna F.; Kataria R.; Madan S.; Ali S.Z.; Diab K.; Leyton C.; Arfaras-Melainis A.; Kim P.; Giorgi F.M.; Vukelic S.; Saeed O.; Patel S.R.; Sims D.B.; Jorde U.P.
A History of Repeated Alcohol Intoxication Promotes Cognitive Impairment and Gene Expression Signatures of Disease Progression in the 3xTg Mouse Model of Alzheimer’s Disease
2023 Sanna P.P.; Cabrelle C.; Kawamura T.; Mercatelli D.; O'connor N.; Roberts A.J.; Repunte-Canonigo V.; Giorgi F.M.
A modular master regulator landscape controls cancer transcriptional identity
2021 Paull, Evan O; Aytes, Alvaro; Jones, Sunny J; Subramaniam, Prem S; Giorgi, Federico M; Douglass, Eugene F; Tagore, Somnath; Chu, Brennan; Vasciaveo, Alessandro; Zheng, Siyuan; Verhaak, Roel; Abate-Shen, Cory; Alvarez, Mariano J; Califano, Andrea
Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana
2017 Giuntoli, Beatrice; Shukla, Vinay; Maggiorelli, Federica; Giorgi, Federico M.; Lombardi, Lara; Perata, Pierdomenico; Licausi, Francesco
Algorithm-driven Artifacts in median polish summarization of Microarray data
2010 Giorgi, Federico M.; Bolger, Anthony M.; Lohse, Marc; Usadel, Bjoern*
An extensive evaluation of read trimming effects on illumina NGS data analysis
2013 Del Fabbro, Cristian; Scalabrin, Simone; Morgante, Michele; Giorgi, Federico M.
ARACNe-AP: Gene network reverse engineering through adaptive partitioning inference of mutual information
2016 Lachmann, Alexander; Giorgi, Federico M.; Lopez, Gonzalo; Califano, Andrea*
CEBPA-regulated lncRNAs, new players in the study of acute myeloid leukemia
2014 Hughes, James M.; Salvatori, Beatrice; Giorgi, Federico M.; Bozzoni, Irene; Fatica, Alessandro*
Co-expression tools for plant biology: Opportunities for hypothesis generation and caveats
2009 Usadel, Björn; Obayashi, Takeshi; Mutwil, Marek; Giorgi, Federico M.; Bassel, George W.; Tanimoto, Mimi; Chow, Amanda; Steinhauser, Dirk; Persson, Staffan; Provart, Nicholas J.*
Comparative study of RNA-seq- and Microarray-derived coexpression networks in Arabidopsis thaliana
2013 Giorgi, Federico M.; Del Fabbro, Cristian; Licausi, Francesco
Copper chelation suppresses epithelial-mesenchymal transition by inhibition of canonical and non-canonical TGF-β signaling pathways in cancer
2023 Poursani E.M.; Mercatelli D.; Raninga P.; Bell J.L.; Saletta F.; Kohane F.V.; Neumann D.P.; Zheng Y.; Rouaen J.R.C.; Jue T.R.; Michniewicz F.T.; Schadel P.; Kasiou E.; Tsoli M.; Cirillo G.; Waters S.; Shai-Hee T.; Cazzoli R.; Brettle M.; Slapetova I.; Kasherman M.; Whan R.; Souza-Fonseca-Guimaraes F.; Vahdat L.; Ziegler D.; Lock J.G.; Giorgi F.M.; Khanna K.K.; Vittorio O.
Copper: An Intracellular Achilles’ Heel Allowing the Targeting of Epigenetics, Kinase Pathways, and Cell Metabolism in Cancer Therapeutics
2021 Michniewicz F.; Saletta F.; Rouaen J.R.C.; Hewavisenti R.V.; Mercatelli D.; Cirillo G.; Giorgi F.M.; Trahair T.; Ziegler D.; Vittorio O.
Coronapp: A web application to annotate and monitor SARS-CoV-2 mutations
2021 Mercatelli D.; Triboli L.; Fornasari E.; Ray F.; Giorgi F.M.
Correction: Inferring Protein Modulation from Gene Expression Data Using Conditional Mutual Information
2016 Giorgi, Federico M; Lopez, Gonzalo; Woo, Jung H; Bisikirska, Brygida; Califano, Andrea; Bansal, Mukesh
Corticosteroid sensitization drives opioid addiction
2022 Carmack S.A.; Vendruscolo J.C.M.; Adrienne McGinn M.; Miranda-Barrientos J.; Repunte-Canonigo V.; Bosse G.D.; Mercatelli D.; Giorgi F.M.; Fu Y.; Hinrich A.J.; Jodelka F.M.; Ling K.; Messing R.O.; Peterson R.T.; Rigo F.; Edwards S.; Sanna P.P.; Morales M.; Hastings M.L.; Koob G.F.; Vendruscolo L.F.
corto: a lightweight R package for gene network inference and master regulator analysis
2020 Mercatelli, Daniele; Lopez-Garcia, Gonzalo; Giorgi, Federico M
Corto: A lightweight R package for gene network inference and master regulator analysis
2020 Mercatelli D.; Lopez-Garcia G.; Giorgi F.M.
Cross-Species Transcriptomics Analysis Highlights Conserved Molecular Responses to Per- and Polyfluoroalkyl Substances
2023 Beccacece, Livia; Costa, Filippo; Pascali, Jennifer Paola; Giorgi, Federico Manuel
Titolo | Autore(i) | Anno | Periodico | Editore | Tipo | File |
---|---|---|---|---|---|---|
A CLK3-HMGA2 Alternative Splicing Axis Impacts Human Hematopoietic Stem Cell Molecular Identity throughout Development | Cesana, Marcella; Guo, Michael H.; Cacchiarelli, Davide; Wahlster, Lara; Barragan, Jessica; Doula...tov, Sergei; Vo, Linda T.; Salvatori, Beatrice; Trapnell, Cole; Clement, Kendell; Cahan, Patrick; Tsanov, Kaloyan M.; Sousa, Patricia M.; Tazon-Vega, Barbara; Bolondi, Adriano; Giorgi, Federico M.; Califano, Andrea; Rinn, John L.; Meissner, Alexander; Hirschhorn, Joel N.; Daley, George Q. | 2018-01-01 | CELL STEM CELL | - | 1.01 Articolo in rivista | 1-s2.0-S1934590918301188-main.pdf |
A g316a polymorphism in the ornithine decarboxylase gene promoter modulates mycn‐driven childhood neuroblastoma | Gamble L.D.; Purgato S.; Henderson M.J.; Di Giacomo S.; Russell A.J.; Pigini P.; Murray J.; Valli... E.; Milazzo G.; Giorgi F.M.; Cowley M.; Ashton L.J.; Bhalshankar J.; Schleiermacher G.; Rihani A.; Van Maerken T.; Vandesompele J.; Speleman F.; Versteeg R.; Koster J.; Eggert A.; Noguera R.; Stallings R.L.; Tonini G.P.; Fong K.; Vaksman Z.; Diskin S.J.; Maris J.M.; London W.B.; Marshall G.M.; Ziegler D.S.; Hogarty M.D.; Perini G.; Norris M.D.; Haber M. | 2021-01-01 | CANCERS | - | 1.01 Articolo in rivista | cancers-13-01807-v2.pdf |
A history of heart failure is an independent risk factor for death in patients admitted with coronavirus 19 disease | Castagna F.; Kataria R.; Madan S.; Ali S.Z.; Diab K.; Leyton C.; Arfaras-Melainis A.; Kim P.; Gio...rgi F.M.; Vukelic S.; Saeed O.; Patel S.R.; Sims D.B.; Jorde U.P. | 2021-01-01 | JOURNAL OF CARDIOVASCULAR DEVELOPMENT AND DISEASE | - | 1.01 Articolo in rivista | jcdd-08-00077 (3).pdf |
A History of Repeated Alcohol Intoxication Promotes Cognitive Impairment and Gene Expression Signatures of Disease Progression in the 3xTg Mouse Model of Alzheimer’s Disease | Sanna P.P.; Cabrelle C.; Kawamura T.; Mercatelli D.; O'connor N.; Roberts A.J.; Repunte-Canonigo ...V.; Giorgi F.M. | 2023-01-01 | ENEURO | - | 1.01 Articolo in rivista | ENEURO.0456-22.2023.full.pdf |
A modular master regulator landscape controls cancer transcriptional identity | Paull, Evan O; Aytes, Alvaro; Jones, Sunny J; Subramaniam, Prem S; Giorgi, Federico M; Douglass, ...Eugene F; Tagore, Somnath; Chu, Brennan; Vasciaveo, Alessandro; Zheng, Siyuan; Verhaak, Roel; Abate-Shen, Cory; Alvarez, Mariano J; Califano, Andrea | 2021-01-01 | CELL | - | 1.01 Articolo in rivista | A modular master regulator landscape controls cancer transcriptional identity_compressed.pdf |
Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana | Giuntoli, Beatrice; Shukla, Vinay; Maggiorelli, Federica; Giorgi, Federico M.; Lombardi, Lara; Pe...rata, Pierdomenico; Licausi, Francesco | 2017-01-01 | PLANT, CELL AND ENVIRONMENT | - | 1.01 Articolo in rivista | - |
Algorithm-driven Artifacts in median polish summarization of Microarray data | Giorgi, Federico M.; Bolger, Anthony M.; Lohse, Marc; Usadel, Bjoern* | 2010-01-01 | BMC BIOINFORMATICS | - | 1.01 Articolo in rivista | 1471-2105-11-553.pdf |
An extensive evaluation of read trimming effects on illumina NGS data analysis | Del Fabbro, Cristian; Scalabrin, Simone; Morgante, Michele; Giorgi, Federico M. | 2013-01-01 | PLOS ONE | - | 1.01 Articolo in rivista | - |
ARACNe-AP: Gene network reverse engineering through adaptive partitioning inference of mutual information | Lachmann, Alexander; Giorgi, Federico M.; Lopez, Gonzalo; Califano, Andrea* | 2016-01-01 | BIOINFORMATICS | - | 1.01 Articolo in rivista | btw216.pdf |
CEBPA-regulated lncRNAs, new players in the study of acute myeloid leukemia | Hughes, James M.; Salvatori, Beatrice; Giorgi, Federico M.; Bozzoni, Irene; Fatica, Alessandro* | 2014-01-01 | JOURNAL OF HEMATOLOGY & ONCOLOGY | - | 1.01 Articolo in rivista | - |
Co-expression tools for plant biology: Opportunities for hypothesis generation and caveats | Usadel, Björn; Obayashi, Takeshi; Mutwil, Marek; Giorgi, Federico M.; Bassel, George W.; Tanimoto..., Mimi; Chow, Amanda; Steinhauser, Dirk; Persson, Staffan; Provart, Nicholas J.* | 2009-01-01 | PLANT, CELL AND ENVIRONMENT | - | 1.01 Articolo in rivista | - |
Comparative study of RNA-seq- and Microarray-derived coexpression networks in Arabidopsis thaliana | Giorgi, Federico M.; Del Fabbro, Cristian; Licausi, Francesco | 2013-01-01 | BIOINFORMATICS | - | 1.01 Articolo in rivista | - |
Copper chelation suppresses epithelial-mesenchymal transition by inhibition of canonical and non-canonical TGF-β signaling pathways in cancer | Poursani E.M.; Mercatelli D.; Raninga P.; Bell J.L.; Saletta F.; Kohane F.V.; Neumann D.P.; Zheng... Y.; Rouaen J.R.C.; Jue T.R.; Michniewicz F.T.; Schadel P.; Kasiou E.; Tsoli M.; Cirillo G.; Waters S.; Shai-Hee T.; Cazzoli R.; Brettle M.; Slapetova I.; Kasherman M.; Whan R.; Souza-Fonseca-Guimaraes F.; Vahdat L.; Ziegler D.; Lock J.G.; Giorgi F.M.; Khanna K.K.; Vittorio O. | 2023-01-01 | CELL & BIOSCIENCE | - | 1.01 Articolo in rivista | Copper chelation suppresses epithelial-mesenchymal transition by inhibition of canonical and non-canonical TGF-β signaling pathways in cancer.pdf |
Copper: An Intracellular Achilles’ Heel Allowing the Targeting of Epigenetics, Kinase Pathways, and Cell Metabolism in Cancer Therapeutics | Michniewicz F.; Saletta F.; Rouaen J.R.C.; Hewavisenti R.V.; Mercatelli D.; Cirillo G.; Giorgi F....M.; Trahair T.; Ziegler D.; Vittorio O. | 2021-01-01 | CHEMMEDCHEM | - | 1.01 Articolo in rivista | - |
Coronapp: A web application to annotate and monitor SARS-CoV-2 mutations | Mercatelli D.; Triboli L.; Fornasari E.; Ray F.; Giorgi F.M. | 2021-01-01 | JOURNAL OF MEDICAL VIROLOGY | - | 1.01 Articolo in rivista | JMV-9999-na.pdf |
Correction: Inferring Protein Modulation from Gene Expression Data Using Conditional Mutual Information | Giorgi, Federico M; Lopez, Gonzalo; Woo, Jung H; Bisikirska, Brygida; Califano, Andrea; Bansal, M...ukesh | 2016-01-01 | PLOS ONE | - | 1.01 Articolo in rivista | - |
Corticosteroid sensitization drives opioid addiction | Carmack S.A.; Vendruscolo J.C.M.; Adrienne McGinn M.; Miranda-Barrientos J.; Repunte-Canonigo V.;... Bosse G.D.; Mercatelli D.; Giorgi F.M.; Fu Y.; Hinrich A.J.; Jodelka F.M.; Ling K.; Messing R.O.; Peterson R.T.; Rigo F.; Edwards S.; Sanna P.P.; Morales M.; Hastings M.L.; Koob G.F.; Vendruscolo L.F. | 2022-01-01 | MOLECULAR PSYCHIATRY | - | 1.01 Articolo in rivista | - |
corto: a lightweight R package for gene network inference and master regulator analysis | Mercatelli, Daniele; Lopez-Garcia, Gonzalo; Giorgi, Federico M | 2020-01-01 | BIOINFORMATICS | - | 1.01 Articolo in rivista | - |
Corto: A lightweight R package for gene network inference and master regulator analysis | Mercatelli D.; Lopez-Garcia G.; Giorgi F.M. | 2020-01-01 | BIOINFORMATICS | - | 1.01 Articolo in rivista | OP-CBIO200223 3916..3917.pdf; bioinformatics_36_12_3916_s2.zip |
Cross-Species Transcriptomics Analysis Highlights Conserved Molecular Responses to Per- and Polyfluoroalkyl Substances | Beccacece, Livia; Costa, Filippo; Pascali, Jennifer Paola; Giorgi, Federico Manuel | 2023-01-01 | TOXICS | - | 1.01 Articolo in rivista | toxics-11-00567-v2.pdf |