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MARTELLI, PIER LUIGI

MARTELLI, PIER LUIGI  

FABIT - DIPARTIMENTO DI FARMACIA E BIOTECNOLOGIE  

Docenti di ruolo di Ia fascia  

Martelli, Pierluigi  

Mostra records
Risultati 1 - 20 di 272 (tempo di esecuzione: 0.054 secondi).
Titolo Autore(i) Anno Periodico Editore Tipo File
Alpha&ESMhFolds: A Web Server for Comparing AlphaFold2 and ESMFold Models of the Human Reference Proteome Manfredi, Matteo; Savojardo, Castrense; Iardukhin, Georgii; Salomoni, Davide; Costantini, Alessan...dro; Martelli, Pier Luigi; Casadio, Rita 2024-01-01 JOURNAL OF MOLECULAR BIOLOGY - 1.01 Articolo in rivista 1-s2.0-S0022283624001888-main(1).pdf; 1-s2.0-S0022283624001888-mmc1.docx
Assessing predictions on fitness effects of missense variants in HMBS in CAGI6 Zhang, J.; Kinch, L.; Katsonis, P.; Lichtarge, O.; Jagota, M.; Song, Y. S.; Sun, Y.; Shen, Y.; Ku...ru, N.; Dereli, O.; Adebali, O.; Alladin, M. A.; Pal, D.; Capriotti, E.; Turina, M. P.; Savojardo, C.; Martelli, P. L.; Babbi, G.; Casadio, R.; Pucci, F.; Rooman, M.; Cia, G.; Tsishyn, M.; Strokach, A.; Hu, Z.; van Loggerenberg, W.; Roth, F. P.; Radivojac, P.; Brenner, S. E.; Cong, Q.; Grishin, N. V. 2024-01-01 HUMAN GENETICS - 1.01 Articolo in rivista Assessing predictions on fitness effects of missense variants in HMBS in CAGI6_accepted (3)_compressed.pdf
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods Null, Null; Jain, Shantanu; Bakolitsa, Constantina; Brenner, Steven E.; Radivojac, Predrag; Moult..., John; Repo, Susanna; Hoskins, Roger A.; Andreoletti, Gaia; Barsky, Daniel; Chellapan, Ajithavalli; Chu, Hoyin; Dabbiru, Navya; Kollipara, Naveen K.; Ly, Melissa; Neumann, Andrew J.; Pal, Lipika R.; Odell, Eric; Pandey, Gaurav; Peters-Petrulewicz, Robin C.; Srinivasan, Rajgopal; Yee, Stephen F.; Yeleswarapu, Sri Jyothsna; Zuhl, Maya; Adebali, Ogun; Patra, Ayoti; Beer, Michael A.; Hosur, Raghavendra; Peng, Jian; Bernard, Brady M.; Berry, Michael; Dong, Shengcheng; Boyle, Alan P.; Adhikari, Aashish; Chen, Jingqi; Hu, Zhiqiang; Wang, Robert; Wang, Yaqiong; Miller, Maximilian; Wang, Yanran; Bromberg, Yana; Turina, Paola; Capriotti, Emidio; Han, James J.; Ozturk, Kivilcim; Carter, Hannah; Babbi, Giulia; Bovo, Samuele; Di Lena, Pietro; Martelli, Pier Luigi; Savojardo, Castrense; Casadio, Rita; Cline, Melissa S.; De Baets, Greet; Bonache, Sandra; Díez, Orland; Gutiérrez-Enríquez, Sara; Fernández, Alejandro; Montalban, Gemma; Ootes, Lars; Özkan, Selen; Padilla, Natàlia; Riera, Casandra; De la Cruz, Xavier; Diekhans, Mark; Huwe, Peter J.; Wei, Qiong; Xu, Qifang; Dunbrack, Roland L.; Gotea, Valer; Elnitski, Laura; Margolin, Gennady; Fariselli, Piero; Kulakovskiy, Ivan V.; Makeev, Vsevolod J.; Penzar, Dmitry D.; Vorontsov, Ilya E.; Favorov, Alexander V.; Forman, Julia R.; Hasenahuer, Marcia; Fornasari, Maria S.; Parisi, Gustavo; Avsec, Ziga; Çelik, Muhammed H.; Nguyen, Thi Yen Duong; Gagneur, Julien; Shi, Fang-Yuan; Edwards, Matthew D.; Guo, Yuchun; Tian, Kevin; Zeng, Haoyang; Gifford, David K.; Göke, Jonathan; Zaucha, Jan; Gough, Julian; Ritchie, Graham R. S.; Frankish, Adam; Mudge, Jonathan M.; Harrow, Jennifer; Young, Erin L.; Yu, Yao; Huff, Chad D.; Murakami, Katsuhiko; Nagai, Yoko; Imanishi, Tadashi; Mungall, Christopher J.; Jacobsen, Julius O. B.; Kim, Dongsup; Jeong, Chan-Seok; Jones, David T.; Li, Mulin Jun; Guthrie, Violeta Beleva; Bhattacharya, Rohit; Chen, Yun-Ching; Douville, Christopher; Fan, Jean; Kim, Dewey; Masica, David; Niknafs, Noushin; Sengupta, Sohini; Tokheim, Collin; Turner, Tychele N.; Yeo, Hui Ting Grace; Karchin, Rachel; Shin, Sunyoung; Welch, Rene; Keles, Sunduz; Li, Yue; Kellis, Manolis; Corbi-Verge, Carles; Strokach, Alexey V.; Kim, Philip M.; Klein, Teri E.; Mohan, Rahul; Sinnott-Armstrong, Nicholas A.; Wainberg, Michael; Kundaje, Anshul; Gonzaludo, Nina; Mak, Angel C. Y.; Chhibber, Aparna; Lam, Hugo Y. K.; Dahary, Dvir; Fishilevich, Simon; Lancet, Doron; Lee, Insuk; Bachman, Benjamin; Katsonis, Panagiotis; Lua, Rhonald C.; Wilson, Stephen J.; Lichtarge, Olivier; Bhat, Rajendra R.; Sundaram, Laksshman; Viswanath, Vivek; Bellazzi, Riccardo; Nicora, Giovanna; Rizzo, Ettore; Limongelli, Ivan; Mezlini, Aziz M.; Chang, Ray; Kim, Serra; Lai, Carmen; O’Connor, Robert; Topper, Scott; van den Akker, Jeroen; Zhou, Alicia Y.; Zimmer, Anjali D.; Mishne, Gilad; Bergquist, Timothy R.; Breese, Marcus R.; Guerrero, Rafael F.; Jiang, Yuxiang; Kiga, Nikki; Li, Biao; Mort, Matthew; Pagel, Kymberleigh A.; Pejaver, Vikas; Stamboulian, Moses H.; Thusberg, Janita; Mooney, Sean D.; Teerakulkittipong, Nuttinee; Cao, Chen; Kundu, Kunal; Yin, Yizhou; Yu, Chen-Hsin; Kleyman, Michael; Lin, Chiao-Feng; Stackpole, Mary; Mount, Stephen M.; Eraslan, Gökcen; Mueller, Nikola S.; Naito, Tatsuhiko; Rao, Aliz R.; Azaria, Johnathan R.; Brodie, Aharon; Ofran, Yanay; Garg, Aditi; Pal, Debnath; Hawkins-Hooker, Alex; Kenlay, Henry; Reid, John; Mucaki, Eliseos J.; Rogan, Peter K.; Schwarz, Jana M.; Searls, David B.; Lee, Gyu Rie; Seok, Chaok; Krämer, Andreas; Shah, Sohela; Huang, ChengLai V.; Kirsch, Jack F.; Shatsky, Maxim; Cao, Yue; Chen, Haoran; Karimi, Mostafa; Moronfoye, Oluwaseyi; Sun, Yuanfei; Shen, Yang; Shigeta, Ron; Ford, Colby T.; Nodzak, Conor; Uppal, Aneeta; Shi, Xinghua; Joseph, Thomas; Kotte, Sujatha; Rana, Sadhna; Rao, Aditya; Saipradeep, V. G.; Sivadasan, Naveen; Sunderam, Uma; Stanke, Mario; Su, Andrew; Adzhubey, Ivan; Jordan, Daniel M.; Sunyaev, Shamil; Rousseau, Frederic; Schymkowitz, Joost; Van Durme, Joost; Tavtigian, Sean V.; Carraro, Marco; Giollo, Manuel; Tosatto, Silvio C. E.; Adato, Orit; Carmel, Liran; Cohen, Noa E.; Fenesh, Tzila; Holtzer, Tamar; Juven-Gershon, Tamar; Unger, Ron; Niroula, Abhishek; Olatubosun, Ayodeji; Väliaho, Jouni; Yang, Yang; Vihinen, Mauno; Wahl, Mary E.; Chang, Billy; Chong, Ka Chun; Hu, Inchi; Sun, Rui; Wu, William Ka Kei; Xia, Xiaoxuan; Zee, Benny C.; Wang, Maggie H.; Wang, Meng; Wu, Chunlei; Lu, Yutong; Chen, Ken; Yang, Yuedong; Yates, Christopher M.; Kreimer, Anat; Yan, Zhongxia; Yosef, Nir; Zhao, Huying; Wei, Zhipeng; Yao, Zhaomin; Zhou, Fengfeng; Folkman, Lukas; Zhou, Yaoqi; Daneshjou, Roxana; Altman, Russ B.; Inoue, Fumitaka; Ahituv, Nadav; Arkin, Adam P.; Lovisa, Federica; Bonvini, Paolo; Bowdin, Sarah; Gianni, Stefano; Mantuano, Elide; Minicozzi, Velia; Novak, Leonore; Pasquo, Alessandra; Pastore, Annalisa; Petrosino, Maria; Puglisi, Rita; Toto, Angelo; Veneziano, Liana; Chiaraluce, Roberta; Ball, Mad P.; Bobe, Jason R.; Church, George M.; Consalvi, Valerio; Cooper, David N.; Buckley, Bethany A.; Sheridan, Molly B.; Cutting, Garry R.; Scaini, Maria Chiara; Cygan, Kamil J.; Fredericks, Alger M.; Glidden, David T.; Neil, Christopher; Rhine, Christy L.; Fairbrother, William G.; Alontaga, Aileen Y.; Fenton, Aron W.; Matreyek, Kenneth A.; Starita, Lea M.; Fowler, Douglas M.; Löscher, Britt-Sabina; Franke, Andre; Adamson, Scott I.; Graveley, Brenton R.; Gray, Joe W.; Malloy, Mary J.; Kane, John P.; Kousi, Maria; Katsanis, Nicholas; Schubach, Max; Kircher, Martin; Mak, Angel C. Y.; Tang, Paul L. F.; Kwok, Pui-Yan; Lathrop, Richard H.; Clark, Wyatt T.; Yu, Guoying K.; Lebowitz, Jonathan H.; Benedicenti, Francesco; Bettella, Elisa; Bigoni, Stefania; Cesca, Federica; Mammi, Isabella; Marino-Buslje, Cristina; Milani, Donatella; Peron, Angela; Polli, Roberta; Sartori, Stefano; Stanzial, Franco; Toldo, Irene; Turolla, Licia; Aspromonte, Maria C.; Bellini, Mariagrazia; Leonardi, Emanuela; Liu, Xiaoming; Marshall, Christian; Mccombie, W. Richard; Elefanti, Lisa; Menin, Chiara; Meyn, M. Stephen; Murgia, Alessandra; Nadeau, Kari C. Y.; Neuhausen, Susan L.; Nussbaum, Robert L.; Pirooznia, Mehdi; Potash, James B.; Dimster-Denk, Dago F.; Rine, Jasper D.; Sanford, Jeremy R.; Snyder, Michael; Cote, Atina G.; Sun, Song; Verby, Marta W.; Weile, Jochen; Roth, Frederick P.; Tewhey, Ryan; Sabeti, Pardis C.; Campagna, Joan; Refaat, Marwan M.; Wojciak, Julianne; Grubb, Soren; Schmitt, Nicole; Shendure, Jay; Spurdle, Amanda B.; Stavropoulos, Dimitri J.; Walton, Nephi A.; Zandi, Peter P.; Ziv, Elad; Burke, Wylie; Chen, Flavia; Carr, Lawrence R.; Martinez, Selena; Paik, Jodi; Harris-Wai, Julie; Yarborough, Mark; Fullerton, Stephanie M.; Koenig, Barbara A.; Mcinnes, Gregory; Shigaki, Dustin; Chandonia, John-Marc; Furutsuki, Mabel; Kasak, Laura; Yu, Changhua; Chen, Rui; Friedberg, Iddo; Getz, Gad A.; Cong, Qian; Kinch, Lisa N.; Zhang, Jing; Grishin, Nick V.; Voskanian, Alin; Kann, Maricel G.; Tran, Elizabeth; Ioannidis, Nilah M.; Hunter, Jesse M.; Udani, Rupa; Cai, Binghuang; Morgan, Alexander A.; Sokolov, Artem; Stuart, Joshua M.; Minervini, Giovanni; Monzon, Alexander M.; Batzoglou, Serafim; Butte, Atul J.; Greenblatt, Marc S.; Hart, Reece K.; Hernandez, Ryan; Hubbard, Tim J. P.; Kahn, Scott; O’Donnell-Luria, Anne; Ng, Pauline C.; Shon, John; Veltman, Joris; Zook, Justin M. 2024-01-01 GENOME BIOLOGY - 1.01 Articolo in rivista CAGI flag 2024.pdf; 13059_2023_3113_MOESM1_ESM.docx; 13059_2023_3113_MOESM2_ESM.xls; 13059_2023_3113_MOESM3_ESM.xlsx; 13059_2023_3113_MOESM4_ESM.xls; 13059_2023_3113_MOESM5_ESM.xls; 13059_2023_3113_MOESM6_ESM.xls; 13059_2023_3113_MOESM8_ESM.docx; 13059_2023_3113_MOESM7_ESM.xls
CoCoNat: A Deep Learning–Based Tool for the Prediction of Coiled-coil Domains in Protein Sequences Manfredi, Matteo; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita 2024-01-01 BIO-PROTOCOL - 1.01 Articolo in rivista Bio-protocol4935.pdf; 2305206_File S1.docx
Critical assessment of variant prioritization methods for rare disease diagnosis within the rare genomes project Stenton, Sarah L.; O'Leary, Melanie C.; Lemire, Gabrielle; VanNoy, Grace E.; DiTroia, Stephanie; ...Ganesh, Vijay S.; Groopman, Emily; O'Heir, Emily; Mangilog, Brian; Osei-Owusu, Ikeoluwa; Pais, Lynn S.; Serrano, Jillian; Singer-Berk, Moriel; Weisburd, Ben; Wilson, Michael W.; Austin-Tse, Christina; Abdelhakim, Marwa; Althagafi, Azza; Babbi, Giulia; Bellazzi, Riccardo; Bovo, Samuele; Carta, Maria Giulia; Casadio, Rita; Coenen, Pieter-Jan; De Paoli, Federica; Floris, Matteo; Gajapathy, Manavalan; Hoehndorf, Robert; Jacobsen, Julius O. B.; Joseph, Thomas; Kamandula, Akash; Katsonis, Panagiotis; Kint, Cyrielle; Lichtarge, Olivier; Limongelli, Ivan; Lu, Yulan; Magni, Paolo; Mamidi, Tarun Karthik Kumar; Martelli, Pier Luigi; Mulargia, Marta; Nicora, Giovanna; Nykamp, Keith; Pejaver, Vikas; Peng, Yisu; Pham, Thi Hong Cam; Podda, Maurizio S.; Rao, Aditya; Rizzo, Ettore; Saipradeep, Vangala G.; Savojardo, Castrense; Schols, Peter; Shen, Yang; Sivadasan, Naveen; Smedley, Damian; Soru, Dorian; Srinivasan, Rajgopal; Sun, Yuanfei; Sunderam, Uma; Tan, Wuwei; Tiwari, Naina; Wang, Xiao; Wang, Yaqiong; Williams, Amanda; Worthey, Elizabeth A.; Yin, Rujie; You, Yuning; Zeiberg, Daniel; Zucca, Susanna; Bakolitsa, Constantina; Brenner, Steven E.; Fullerton, Stephanie M.; Radivojac, Predrag; Rehm, Heidi L.; O'Donnell-Luria, Anne 2024-01-01 HUMAN GENOMICS - 1.01 Articolo in rivista Human Mutation - 2024- Stenton - Critical assessment of variant prioritization.pdf
Dispersion of antimicrobial resistant bacteria in pig farms and in the surrounding environment Scicchitano, Daniel; Leuzzi, Daniela; Babbi, Giulia; Palladino, Giorgia; Turroni, Silvia; Laczny,... Cédric Christian; Wilmes, Paul; Correa, Federico; Leekitcharoenphon, Pimlapas; Savojardo, Castrense; Luise, Diana; Martelli, Pierluigi; Trevisi, Paolo; Aarestrup, Frank Møller; Candela, Marco; Rampelli, Simone 2024-01-01 ANIMAL MICROBIOME - 1.01 Articolo in rivista s42523-024-00305-8.pdf
E-pRSA: Embeddings Improve the Prediction of Residue Relative Solvent Accessibility in Protein Sequence Manfredi, Matteo; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita 2024-01-01 JOURNAL OF MOLECULAR BIOLOGY - 1.01 Articolo in rivista 1-s2.0-S0022283624000664-main.pdf; 1-s2.0-S0022283624000664-mmc1.docx; E-pRSA ManuscriptUnmarked-Complete.pdf
MultifacetedProtDB: a database of human proteins with multiple functions Bertolini, Elisa; Babbi, Giulia; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita 2024-01-01 NUCLEIC ACIDS RESEARCH - 1.01 Articolo in rivista gkad783.pdf
Routes of dispersion of antibiotic resistance genes from the poultry farm system Daniel Scicchitano, Giulia Babbi, Giorgia Palladino, Silvia Turroni, Yitagele Terefe Mekonnen, Cé...dric Laczny, Paul Wilmes, Pimlapas Leekitcharoenphon, Andrea Castagnetti, Federica D'Amico, Patrizia Brigidi, Castrense Savojardo, Gerardo Manfreda, Pierluigi Martelli, Alessandra De Cesare, Frank Møller Aarestrup, Marco Candela, Simone Rampelli 2024-01-01 SCIENCE OF THE TOTAL ENVIRONMENT - 1.01 Articolo in rivista 1-s2.0-S0048969723077161-main-min.pdf
Testing the Capability of Embedding-Based Alignments on the GST Superfamily Classification: The Role of Protein Length Vazzana, Gabriele; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita 2024-01-01 MOLECULES - 1.01 Articolo in rivista -
Whole Genome Sequence Analysis of Brucella spp. from Human, Livestock, and Wildlife in South Africa Mazwi, K. D.; Lekota, K. E.; Glover, B. A.; Kolo, F. B.; Hassim, A.; Rossouw, J.; Jonker, A.; Woj...no, J. M.; Profiti, G.; Martelli, P. L.; Casadio, R.; Zilli, K.; Janowicz, A.; Marotta, F.; Garofolo, G.; van Heerden, H. 2024-01-01 JOURNAL OF MICROBIOLOGY - 1.01 Articolo in rivista -
CoCoNat: a novel method based on deep learning for coiled-coil prediction Madeo G.; Savojardo C.; Manfredi M.; Martelli P.L.; Casadio R. 2023-01-01 BIOINFORMATICS - 1.01 Articolo in rivista btad495.pdf; btad495_supplementary_data.pdf
Combined targeted and untargeted metabolomics in pigs coupled with genomic information: Towards a comprehensive genetic characterization of the pig metabolome S. Bovo,
G. Schiavo,
F. Fanelli,
A. Ribani,
F. Bertolini,
M. Gallo,
G. Galimberti,
Stefani...a Dall’Olio,
PL. Martelli,
R. Casadio,
U. Pagotto,
L. Fontanesi 		2023-01-01 - - 4.01 Contributo in Atti di convegno -
Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study Schweke, H.; Xu, Q.; Tauriello, G.; Pantolini, L.; Schwede, T.; Cazals, F.; Lheritier, A.; Fernan...dez-Recio, J.; Rodriguez-Lumbreras, L. A.; Schueler-Furman, O.; Varga, J. K.; Jimenez-Garcia, B.; Reau, M. F.; Bonvin, A. M. J. J.; Savojardo, C.; Martelli, P. L.; Casadio, R.; Tubiana, J.; Wolfson, H. J.; Oliva, R.; Barradas-Bautista, D.; Ricciardelli, T.; Cavallo, L.; Venclovas, C.; Olechnovic, K.; Guerois, R.; Andreani, J.; Martin, J.; Wang, X.; Terashi, G.; Sarkar, D.; Christoffer, C.; Aderinwale, T.; Verburgt, J.; Kihara, D.; Marchand, A.; Correia, B. E.; Duan, R.; Qiu, L.; Xu, X.; Zhang, S.; Zou, X.; Dey, S.; Dunbrack, R. L.; Levy, E. D.; Wodak, S. J. 2023-01-01 PROTEOMICS - 1.01 Articolo in rivista -
Finding functional motifs in protein sequences with deep learning and natural language models Savojardo C.; Martelli P.L.; Casadio R. 2023-01-01 CURRENT OPINION IN STRUCTURAL BIOLOGY - 1.01 Articolo in rivista 1-s2.0-S0959440X2300115X-main.pdf
How heritable are metabolomic features? An omic based approach in pigs S. Bovo, G. Schiavo, F. Fanelli, A. Ribani, F. Bertolini, V. Taurisano, M. Gallo, G. Galimberti, ...S. Dall’olio,
P.L. Martelli, R. Casadio, U. Pagotto, L. Fontanesi 		2023-01-01 - - 4.01 Contributo in Atti di convegno -
Influence of body lesion severity on oxidative status and gut microbiota of weaned pigs Correa, F.; Luise, D.; Palladino, G.; Scicchitano, D.; Brigidi, P.; Martelli, P. L.; Babbi, G.; T...urroni, S.; Litta, G.; Candela, M.; Rampelli, S.; Trevisi, P. 2023-01-01 ANIMAL - 1.01 Articolo in rivista 2023 Animal_code microbiota.pdf
ISPRED-SEQ: Deep Neural Networks and Embeddings for Predicting Interaction Sites in Protein Sequences Manfredi M.; Savojardo C.; Martelli P.L.; Casadio R. 2023-01-01 JOURNAL OF MOLECULAR BIOLOGY - 1.01 Articolo in rivista 1-s2.0-S0022283623000190-main.pdf; 1-s2.0-S0022283623000190-mmc1(2).docx
Resources and tools for rare disease variant interpretation Licata L.; Via A.; Turina P.; Babbi G.; Benevenuta S.; Carta C.; Casadio R.; Cicconardi A.; Facch...iano A.; Fariselli P.; Giordano D.; Isidori F.; Marabotti A.; Martelli P.L.; Pascarella S.; Pinelli M.; Pippucci T.; Russo R.; Savojardo C.; Scafuri B.; Valeriani L.; Capriotti E. 2023-01-01 FRONTIERS IN MOLECULAR BIOSCIENCES - 1.01 Articolo in rivista fmolb-10-1169109.pdf; 1169.zip
Whole metabolome and genome analyses provide information on the genetic variability affecting the metabolism in pigs Samuele Bovo,Giuseppina Schiavo, Flaminia Fanelli, Anisa Ribani, Francesca Bertolini, Maurizio Ga...llo, Giuliano Galimberti, Stefania Dall'olio, Pier Luigi Martelli, Rita Casadio, Uberto Pagatto, Luca Fontanesi 2023-01-01 ITALIAN JOURNAL OF ANIMAL SCIENCE - 4.01 Contributo in Atti di convegno -