Sfoglia per Autore
webPDBinder: a server for the identification of ligand binding sites on protein structures
2013 Bianchi V;Mangone I;FERRE' F.;Helmer Citterich M;Ausiello G
Nucleos: a web server for the identification of nucleotide binding sites in protein structures
2013 Parca L;FERRE' F.;Ausiello G;Helmer Citterich M
Performances of bioinformatics pipelines for the identification of pathogens in clinical samples with the de novo assembly approaches: Focus on 2009 pandemic influenza A (H1N1)
2014 Biagini, Tommaso; Bartolini, Barbara; Giombini, Emanuela; Capobianchi, Maria R.; Ferrè, Fabrizio; Chillemi, Giovanni; Desideri, Alessandro
A novel approach to represent and compare RNA secondary structures.
2014 Mattei E;Ausiello G;Ferrè F;Helmer-Citterich M
Computational methods for analysis and inference of kinase/inhibitor relationships.
2014 Ferrè F;Palmeri A;Helmer-Citterich M
A proteome-wide Domain-centric Perspective on Protein Phosphorylation.
2014 Palmeri A;Ausiello G;Ferre F;Helmer-Citterich M;Gherardini PF
Exploiting holistic approaches to model specificity in protein phosphorylation.
2014 Palmeri A;Ferrè F;Helmer-Citterich M
Web-Beagle: a web server for the alignment of RNA secondary structures
2015 Mattei, Eugenio; Pietrosanto, Marco; Ferrè, Fabrizio; Helmer-Citterich, Manuela
A simple protocol for the inference of RNA global pairwise alignments
2015 Mattei, Eugenio; Helmer-Citterich, Manuela; Ferrè, Fabrizio
c-MYC inhibition impairs hypoxia response in glioblastoma multiforme
2016 Mongiardi, Maria Patrizia; Savino, Mauro; Falchetti, Maria Laura; Illi, Barbara; Bozzo, Francesca; Valle, Cristiana; Helmer-Citterich, Manuela; Ferrè, Fabrizio; Nasi, Sergio; Levi, Andrea
The human rs1050286 polymorphism alters LOX-1 expression through modifying miR-24 binding
2016 Morini, Elena; Rizzacasa, Barbara; Pucci, Sabina; Polidoro, Chiara; Ferrè, Fabrizio; Caporossi, Daniela; Helmer Citterich, Manuela; Novelli, Giuseppe; Amati, Francesca
Skeletal muscle transcriptional profiles in two Italian beef breeds, Chianina and Maremmana, reveal breed specific variation
2016 Bongiorni, S; Gruber, C E M; Chillemi, G; Bueno, S; Failla, S; Moioli, B; Ferrè, F; Valentini, A
Transcriptomic investigation of meat tenderness in two Italian cattle breeds
2016 Bongiorni, S; Gruber, C.E.M.; Bueno, S.; Chillemi, G.; Ferrè, F.; Failla, S.; Moioli, B.; Valentini, A.
RNA-Sequencing for profiling goat milk transcriptome in colostrum and mature milk
2016 Crisà, Alessandra; Ferrè, Fabrizio; Chillemi, Giovanni; Moioli, Bianca
A novel method for the identification of conserved structural patterns in RNA: From small scale to high-throughput applications
2016 Pietrosanto, Marco; Mattei, Eugenio; Helmer-Citterich, Manuela; Ferrè, Fabrizio
Next Generation Sequencing and Linkage Analysis for the Molecular Diagnosis of a Novel Overlapping Syndrome Characterized by Hypertrophic Cardiomyopathy and Typical Electrical Instability of Brugada Syndrome
2016 Mango, Ruggiero; Luchetti, Andrea; Sangiuolo, Raffaele; Ferradini, Valentina; Briglia, Nicola; Giardina, Emiliano; Ferrè, Fabrizio; Helmer Citterich, Manuela; Romeo, Francesco; Novelli, Giuseppe; Sangiuolo, Federica
Genome-wide methylation analysis demonstrates that 5-aza-2-deoxycytidine treatment does not cause random DNA demethylation in fragile X syndrome cells
2016 Tabolacci, Elisabetta; Mancano, Giorgia; Lanni, Stella; Palumbo, Federica; Goracci, Martina; Ferrè, Fabrizio; Helmer-Citterich, Manuela; Neri, Giovanni
Revealing protein-lncRNA interaction
2016 Ferrè, Fabrizio; Colantoni, Alessio; Helmer-Citterich, Manuela
Comparison of two NGS platforms for metagenomic analysis of clinical samples
2017 Tommaso, Biagini; Barbara, Bartolini; Emanuela, Giombini; Fabrizio, Ferrè; Marina, Selleri; Gabriella, Rozera; Capobianchi, Maria R.; Giovanni, Chillemi; Alessandro, Desideri
Genome assembly and transcriptome resource for river buffalo, Bubalus bubalis (2n = 50)
2017 Williams, John L; Iamartino, Daniela; Pruitt, Kim D; Sonstegard, Tad; Smith, Timothy P. L; Low, Wai Yee; Biagini, Tommaso; Bomba, Lorenzo; Capomaccio, Stefano; Castiglioni, Bianca; Coletta, Angelo; Corrado, Federica; Ferré, Fabrizio; Iannuzzi, Leopoldo; Lawley, Cynthia; Macciotta, Nicolò; Mcclure, Matthew; Mancini, Giordano; Matassino, Donato; Mazza, Raffaele; Milanesi, Marco; Moioli, Bianca; Morandi, Nicola; Ramunno, Luigi; Peretti, Vincenzo; Pilla, Fabio; Ramelli, Paola; Schroeder, Steven; Strozzi, Francesco; Thibaud-Nissen, Francoise; Zicarelli, Luigi; Ajmone-Marsan, Paolo; Valentini, Alessio; Chillemi, Giovanni; Zimin, Aleksey
| Titolo | Autore(i) | Anno | Periodico | Editore | Tipo | File |
|---|---|---|---|---|---|---|
| webPDBinder: a server for the identification of ligand binding sites on protein structures | Bianchi V;Mangone I;FERRE' F.;Helmer Citterich M;Ausiello G | 2013-01-01 | NUCLEIC ACIDS RESEARCH | - | 1.01 Articolo in rivista | - |
| Nucleos: a web server for the identification of nucleotide binding sites in protein structures | Parca L;FERRE' F.;Ausiello G;Helmer Citterich M | 2013-01-01 | NUCLEIC ACIDS RESEARCH | - | 1.01 Articolo in rivista | - |
| Performances of bioinformatics pipelines for the identification of pathogens in clinical samples with the de novo assembly approaches: Focus on 2009 pandemic influenza A (H1N1) | Biagini, Tommaso; Bartolini, Barbara; Giombini, Emanuela; Capobianchi, Maria R.; Ferrè, Fabrizio;... Chillemi, Giovanni; Desideri, Alessandro | 2014-01-01 | THE OPEN BIOINFORMATICS JOURNAL | - | 1.01 Articolo in rivista | - |
| A novel approach to represent and compare RNA secondary structures. | Mattei E;Ausiello G;Ferrè F;Helmer-Citterich M | 2014-01-01 | NUCLEIC ACIDS RESEARCH | - | 1.01 Articolo in rivista | Mattei_NAR2014.pdf |
| Computational methods for analysis and inference of kinase/inhibitor relationships. | Ferrè F;Palmeri A;Helmer-Citterich M | 2014-01-01 | FRONTIERS IN GENETICS | - | 1.01 Articolo in rivista | Ferre_FrontiersGenetics2014.pdf |
| A proteome-wide Domain-centric Perspective on Protein Phosphorylation. | Palmeri A;Ausiello G;Ferre F;Helmer-Citterich M;Gherardini PF | 2014-01-01 | MOLECULAR & CELLULAR PROTEOMICS | - | 1.01 Articolo in rivista | - |
| Exploiting holistic approaches to model specificity in protein phosphorylation. | Palmeri A;Ferrè F;Helmer-Citterich M | 2014-01-01 | FRONTIERS IN GENETICS | - | 1.01 Articolo in rivista | Palmeri_FrontiersGenetics2014.pdf |
| Web-Beagle: a web server for the alignment of RNA secondary structures | Mattei, Eugenio; Pietrosanto, Marco; Ferrè, Fabrizio; Helmer-Citterich, Manuela | 2015-01-01 | NUCLEIC ACIDS RESEARCH | - | 1.01 Articolo in rivista | Mattei_WebBeagle_NAR2015.pdf |
| A simple protocol for the inference of RNA global pairwise alignments | Mattei, Eugenio; Helmer-Citterich, Manuela; Ferrè, Fabrizio | 2015-01-01 | METHODS IN MOLECULAR BIOLOGY | Springer | 2.01 Capitolo / saggio in libro | - |
| c-MYC inhibition impairs hypoxia response in glioblastoma multiforme | Mongiardi, Maria Patrizia; Savino, Mauro; Falchetti, Maria Laura; Illi, Barbara; Bozzo, Francesca...; Valle, Cristiana; Helmer-Citterich, Manuela; Ferrè, Fabrizio; Nasi, Sergio; Levi, Andrea | 2016-01-01 | ONCOTARGET | - | 1.01 Articolo in rivista | - |
| The human rs1050286 polymorphism alters LOX-1 expression through modifying miR-24 binding | Morini, Elena; Rizzacasa, Barbara; Pucci, Sabina; Polidoro, Chiara; Ferrè, Fabrizio; Caporossi, D...aniela; Helmer Citterich, Manuela; Novelli, Giuseppe; Amati, Francesca | 2016-01-01 | JOURNAL OF CELLULAR AND MOLECULAR MEDICINE | - | 1.01 Articolo in rivista | Morini_JCellMolMed2016.pdf |
| Skeletal muscle transcriptional profiles in two Italian beef breeds, Chianina and Maremmana, reveal breed specific variation | Bongiorni, S; Gruber, C E M; Chillemi, G; Bueno, S; Failla, S; Moioli, B; Ferrè, F; Valentini, A | 2016-01-01 | MOLECULAR BIOLOGY REPORTS | - | 1.01 Articolo in rivista | - |
| Transcriptomic investigation of meat tenderness in two Italian cattle breeds | Bongiorni, S; Gruber, C.E.M.; Bueno, S.; Chillemi, G.; Ferrè, F.; Failla, S.; Moioli, B.; Valenti...ni, A. | 2016-01-01 | ANIMAL GENETICS | - | 1.01 Articolo in rivista | - |
| RNA-Sequencing for profiling goat milk transcriptome in colostrum and mature milk | Crisà, Alessandra; Ferrè, Fabrizio; Chillemi, Giovanni; Moioli, Bianca | 2016-01-01 | BMC VETERINARY RESEARCH | - | 1.01 Articolo in rivista | Crisa_BMCVetRes2016.pdf |
| A novel method for the identification of conserved structural patterns in RNA: From small scale to high-throughput applications | Pietrosanto, Marco; Mattei, Eugenio; Helmer-Citterich, Manuela; Ferrè, Fabrizio | 2016-01-01 | NUCLEIC ACIDS RESEARCH | - | 1.01 Articolo in rivista | Pietrosanto_NAR2016.pdf |
| Next Generation Sequencing and Linkage Analysis for the Molecular Diagnosis of a Novel Overlapping Syndrome Characterized by Hypertrophic Cardiomyopathy and Typical Electrical Instability of Brugada Syndrome | Mango, Ruggiero; Luchetti, Andrea; Sangiuolo, Raffaele; Ferradini, Valentina; Briglia, Nicola; Gi...ardina, Emiliano; Ferrè, Fabrizio; Helmer Citterich, Manuela; Romeo, Francesco; Novelli, Giuseppe; Sangiuolo, Federica | 2016-01-01 | CIRCULATION JOURNAL | - | 1.01 Articolo in rivista | - |
| Genome-wide methylation analysis demonstrates that 5-aza-2-deoxycytidine treatment does not cause random DNA demethylation in fragile X syndrome cells | Tabolacci, Elisabetta; Mancano, Giorgia; Lanni, Stella; Palumbo, Federica; Goracci, Martina; Ferr...è, Fabrizio; Helmer-Citterich, Manuela; Neri, Giovanni | 2016-01-01 | EPIGENETICS & CHROMATIN | - | 1.01 Articolo in rivista | Tabolacci_EpigeneticsChromatin2016.pdf |
| Revealing protein-lncRNA interaction | Ferrè, Fabrizio; Colantoni, Alessio; Helmer-Citterich, Manuela | 2016-01-01 | BRIEFINGS IN BIOINFORMATICS | - | 1.01 Articolo in rivista | Ferre_BriefsBioinfo2016.pdf |
| Comparison of two NGS platforms for metagenomic analysis of clinical samples | Tommaso, Biagini; Barbara, Bartolini; Emanuela, Giombini; Fabrizio, Ferrè; Marina, Selleri; Gabri...ella, Rozera; Capobianchi, Maria R.; Giovanni, Chillemi; Alessandro, Desideri | 2017-01-01 | JOURNAL OF BIOCHEMICAL TECHNOLOGY | - | 1.01 Articolo in rivista | - |
| Genome assembly and transcriptome resource for river buffalo, Bubalus bubalis (2n = 50) | Williams, John L; Iamartino, Daniela; Pruitt, Kim D; Sonstegard, Tad; Smith, Timothy P. L; Low, W...ai Yee; Biagini, Tommaso; Bomba, Lorenzo; Capomaccio, Stefano; Castiglioni, Bianca; Coletta, Angelo; Corrado, Federica; Ferré, Fabrizio; Iannuzzi, Leopoldo; Lawley, Cynthia; Macciotta, Nicolò; Mcclure, Matthew; Mancini, Giordano; Matassino, Donato; Mazza, Raffaele; Milanesi, Marco; Moioli, Bianca; Morandi, Nicola; Ramunno, Luigi; Peretti, Vincenzo; Pilla, Fabio; Ramelli, Paola; Schroeder, Steven; Strozzi, Francesco; Thibaud-Nissen, Francoise; Zicarelli, Luigi; Ajmone-Marsan, Paolo; Valentini, Alessio; Chillemi, Giovanni; Zimin, Aleksey | 2017-01-01 | GIGASCIENCE | - | 1.01 Articolo in rivista | Williams_GigaScience2017.pdf |
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