Sfoglia per Autore
Molecular and biochemical responses to wounding in mesocarp of ripe peach (Prunus persica L. Batsch) fruit
2014 Tosetti, Roberta; Tardelli, Francesca; Tadiello, Alice; Zaffalon, Valerio; Giorgi, Federico M.; Guidi, Lucia; Trainotti, Livio; Bonghi, Claudio; Tonutti, Pietro*
CEBPA-regulated lncRNAs, new players in the study of acute myeloid leukemia
2014 Hughes, James M.; Salvatori, Beatrice; Giorgi, Federico M.; Bozzoni, Irene; Fatica, Alessandro*
ARACNe-AP: Gene network reverse engineering through adaptive partitioning inference of mutual information
2016 Lachmann, Alexander; Giorgi, Federico M.; Lopez, Gonzalo; Califano, Andrea*
Functional characterization of somatic mutations in cancer using network-based inference of protein activity
2016 Alvarez, Mariano J.; Shen, Yao; Giorgi, Federico M; Lachmann, Alexander; Ding, B Belinda; Hilda Ye, B.; Califano, Andrea
Correction: Inferring Protein Modulation from Gene Expression Data Using Conditional Mutual Information
2016 Giorgi, Federico M; Lopez, Gonzalo; Woo, Jung H; Bisikirska, Brygida; Califano, Andrea; Bansal, Mukesh
Detection and removal of spatial bias in multiwell assays
2016 Lachmann, Alexander; Giorgi, Federico M.; Alvarez, Mariano J.; Califano, Andrea
High-definition CpG methylation of novel genes in gastric carcinogenesis identified by next-generation sequencing
2016 Sepulveda, Jorge L.; Gutierrez-Pajares, Jorge L.; Luna, Aesis; Yao, Yuan; Tobias, John W.; Thomas, Steven; Woo, Yanghee; Giorgi, Federico; Komissarova, Elena V.; Califano, Andrea; Wang, Timothy C.; Sepulveda, Antonia R.*
Expression atlas and comparative coexpression network analyses reveal important genes involved in the formation of lignified cell wall in Brachypodium distachyon
2017 Sibout, Richard*; Proost, Sebastian; Hansen, Bjoern Oest; Vaid, Neha; Giorgi, Federico M.; Ho-Yue-Kuang, Severine; Legée, Frédéric; Cézart, Laurent; Bouchabké-Coussa, Oumaya; Soulhat, Camille; Provart, Nicholas; Pasha, Asher; Le Bris, Philippe; Roujol, David; Hofte, Herman; Jamet, Elisabeth; Lapierre, Catherine; Persson, Staffan; Mutwil, Marek
Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana
2017 Giuntoli, Beatrice; Shukla, Vinay; Maggiorelli, Federica; Giorgi, Federico M.; Lombardi, Lara; Perata, Pierdomenico; Licausi, Francesco
A CLK3-HMGA2 Alternative Splicing Axis Impacts Human Hematopoietic Stem Cell Molecular Identity throughout Development
2018 Cesana, Marcella; Guo, Michael H.; Cacchiarelli, Davide; Wahlster, Lara; Barragan, Jessica; Doulatov, Sergei; Vo, Linda T.; Salvatori, Beatrice; Trapnell, Cole; Clement, Kendell; Cahan, Patrick; Tsanov, Kaloyan M.; Sousa, Patricia M.; Tazon-Vega, Barbara; Bolondi, Adriano; Giorgi, Federico M.; Califano, Andrea; Rinn, John L.; Meissner, Alexander; Hirschhorn, Joel N.; Daley, George Q.
VULCAN integrates ChIP-seq with patient-derived co-expression networks to identify GRHL2 as a key co-regulator of ERa at enhancers in breast cancer
2019 Holding, Andrew N.; Giorgi, Federico M.; Donnelly, Amanda; Cullen, Amy E.; Nagarajan, Sankari; Selth, Luke A.; Markowetz, Florian
Unveiling Early Differentiation Induced by Histone Deacetylase Inhibitors in Neuroblastoma Cell Lines: A Single-Cell Transcriptomics Approach
2019 Giorgio MIlazzo, Daniele Mercatelli, Giovanni Perini, Federico M. Giorgi
Pan-cancer and single-cell modelling of genomic alterations through gene expression
2019 Mercatelli D.; Ray F.; Giorgi F.M.
Inhibition of polyamine synthesis and uptake reduces tumor progression and prolongs survival in mouse models of neuroblastoma
2019 Laura D. Gamble, Stefania Purgato, Jayne Murray, Lin Xiao, Denise M. T. Yu, Kimberley M. Hanssen, Federico M. Giorgi, Daniel R. Carter, Andrew J. Gifford, Emanuele Valli, Giorgio Milazzo, Alvin Kamili, Chelsea Mayoh, Bing Liu, Georgina Eden, Sara Sarraf, Sophie Allan, Simone Di Giacomo, Claudia L. Flemming, Amanda J. Russell, Belamy B. Cheung, Andre Oberthuer, Wendy B. London, Matthias Fischer, Toby N. Trahair, Jamie I. Fletcher, Glenn M. Marshall, David S. Ziegler, Michael D. Hogarty, Mark R. Burns, Giovanni Perini, Murray D. Norris, and Michelle Haber
Guest Editor of Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
2020 Federico Manuel Giorgi
Gene regulatory network inference resources: A practical overview
2020 Mercatelli D.; Scalambra L.; Triboli L.; Ray F.; Giorgi F.M.
Corto: A lightweight R package for gene network inference and master regulator analysis
2020 Mercatelli D.; Lopez-Garcia G.; Giorgi F.M.
Intra-tumoral copper modulates PD-L1 expression and influences tumor immune evasion
2020 Voli, Florida; Valli, Emanuele; Lerra, Luigi; Kimpton, Kathleen; Saletta, Federica; Giorgi, Federico M; Mercatelli, Daniele; Rouaen, Jourdin R C; Shen, Sylvie; Murray, Jayne E; Ahmed-Cox, Aria; Cirillo, Giuseppe; Mayoh, Chelsea; Beavis, Paul A; Haber, Michelle; Trapani, Joseph A; Kavallaris, Maria; Vittorio, Orazio
Gene network reverse engineering: The Next Generation
2020 Giorgi F.M.
Spathial: an R package for the evolutionary analysis of biological data
2020 Gardini, Erika; Giorgi, Federico M; Decherchi, Sergio; Cavalli, Andrea
| Titolo | Autore(i) | Anno | Periodico | Editore | Tipo | File |
|---|---|---|---|---|---|---|
| Molecular and biochemical responses to wounding in mesocarp of ripe peach (Prunus persica L. Batsch) fruit | Tosetti, Roberta; Tardelli, Francesca; Tadiello, Alice; Zaffalon, Valerio; Giorgi, Federico M.; G...uidi, Lucia; Trainotti, Livio; Bonghi, Claudio; Tonutti, Pietro* | 2014-01-01 | POSTHARVEST BIOLOGY AND TECHNOLOGY | - | 1.01 Articolo in rivista | - |
| CEBPA-regulated lncRNAs, new players in the study of acute myeloid leukemia | Hughes, James M.; Salvatori, Beatrice; Giorgi, Federico M.; Bozzoni, Irene; Fatica, Alessandro* | 2014-01-01 | JOURNAL OF HEMATOLOGY & ONCOLOGY | - | 1.01 Articolo in rivista | - |
| ARACNe-AP: Gene network reverse engineering through adaptive partitioning inference of mutual information | Lachmann, Alexander; Giorgi, Federico M.; Lopez, Gonzalo; Califano, Andrea* | 2016-01-01 | BIOINFORMATICS | - | 1.01 Articolo in rivista | btw216.pdf |
| Functional characterization of somatic mutations in cancer using network-based inference of protein activity | Alvarez, Mariano J.; Shen, Yao; Giorgi, Federico M; Lachmann, Alexander; Ding, B Belinda; Hilda Y...e, B.; Califano, Andrea | 2016-01-01 | NATURE GENETICS | - | 1.01 Articolo in rivista | ng.3593.pdf |
| Correction: Inferring Protein Modulation from Gene Expression Data Using Conditional Mutual Information | Giorgi, Federico M; Lopez, Gonzalo; Woo, Jung H; Bisikirska, Brygida; Califano, Andrea; Bansal, M...ukesh | 2016-01-01 | PLOS ONE | - | 1.01 Articolo in rivista | - |
| Detection and removal of spatial bias in multiwell assays | Lachmann, Alexander; Giorgi, Federico M.; Alvarez, Mariano J.; Califano, Andrea | 2016-01-01 | BIOINFORMATICS | - | 1.01 Articolo in rivista | - |
| High-definition CpG methylation of novel genes in gastric carcinogenesis identified by next-generation sequencing | Sepulveda, Jorge L.; Gutierrez-Pajares, Jorge L.; Luna, Aesis; Yao, Yuan; Tobias, John W.; Thomas..., Steven; Woo, Yanghee; Giorgi, Federico; Komissarova, Elena V.; Califano, Andrea; Wang, Timothy C.; Sepulveda, Antonia R.* | 2016-01-01 | MODERN PATHOLOGY | - | 1.01 Articolo in rivista | - |
| Expression atlas and comparative coexpression network analyses reveal important genes involved in the formation of lignified cell wall in Brachypodium distachyon | Sibout, Richard*; Proost, Sebastian; Hansen, Bjoern Oest; Vaid, Neha; Giorgi, Federico M.; Ho-Yue...-Kuang, Severine; Legée, Frédéric; Cézart, Laurent; Bouchabké-Coussa, Oumaya; Soulhat, Camille; Provart, Nicholas; Pasha, Asher; Le Bris, Philippe; Roujol, David; Hofte, Herman; Jamet, Elisabeth; Lapierre, Catherine; Persson, Staffan; Mutwil, Marek | 2017-01-01 | NEW PHYTOLOGIST | - | 1.01 Articolo in rivista | - |
| Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana | Giuntoli, Beatrice; Shukla, Vinay; Maggiorelli, Federica; Giorgi, Federico M.; Lombardi, Lara; Pe...rata, Pierdomenico; Licausi, Francesco | 2017-01-01 | PLANT, CELL AND ENVIRONMENT | - | 1.01 Articolo in rivista | - |
| A CLK3-HMGA2 Alternative Splicing Axis Impacts Human Hematopoietic Stem Cell Molecular Identity throughout Development | Cesana, Marcella; Guo, Michael H.; Cacchiarelli, Davide; Wahlster, Lara; Barragan, Jessica; Doula...tov, Sergei; Vo, Linda T.; Salvatori, Beatrice; Trapnell, Cole; Clement, Kendell; Cahan, Patrick; Tsanov, Kaloyan M.; Sousa, Patricia M.; Tazon-Vega, Barbara; Bolondi, Adriano; Giorgi, Federico M.; Califano, Andrea; Rinn, John L.; Meissner, Alexander; Hirschhorn, Joel N.; Daley, George Q. | 2018-01-01 | CELL STEM CELL | - | 1.01 Articolo in rivista | 1-s2.0-S1934590918301188-main.pdf |
| VULCAN integrates ChIP-seq with patient-derived co-expression networks to identify GRHL2 as a key co-regulator of ERa at enhancers in breast cancer | Holding, Andrew N.; Giorgi, Federico M.; Donnelly, Amanda; Cullen, Amy E.; Nagarajan, Sankari; Se...lth, Luke A.; Markowetz, Florian | 2019-01-01 | GENOME BIOLOGY | - | 1.01 Articolo in rivista | s13059-019-1698-z.pdf |
| Unveiling Early Differentiation Induced by Histone Deacetylase Inhibitors in Neuroblastoma Cell Lines: A Single-Cell Transcriptomics Approach | Giorgio MIlazzo, Daniele Mercatelli, Giovanni Perini, Federico M. Giorgi | 2019-01-01 | - | - | 4.02 Riassunto (Abstract) | - |
| Pan-cancer and single-cell modelling of genomic alterations through gene expression | Mercatelli D.; Ray F.; Giorgi F.M. | 2019-01-01 | FRONTIERS IN GENETICS | - | 1.01 Articolo in rivista | fgene-10-00671.pdf |
| Inhibition of polyamine synthesis and uptake reduces tumor progression and prolongs survival in mouse models of neuroblastoma | Laura D. Gamble, Stefania Purgato, Jayne Murray, Lin Xiao, Denise M. T. Yu, Kimberley M. Hanssen,... Federico M. Giorgi, Daniel R. Carter, Andrew J. Gifford, Emanuele Valli, Giorgio Milazzo, Alvin Kamili, Chelsea Mayoh, Bing Liu, Georgina Eden, Sara Sarraf, Sophie Allan, Simone Di Giacomo, Claudia L. Flemming, Amanda J. Russell, Belamy B. Cheung, Andre Oberthuer, Wendy B. London, Matthias Fischer, Toby N. Trahair, Jamie I. Fletcher, Glenn M. Marshall, David S. Ziegler, Michael D. Hogarty, Mark R. Burns, Giovanni Perini, Murray D. Norris, and Michelle Haber | 2019-01-01 | SCIENCE TRANSLATIONAL MEDICINE | - | 1.01 Articolo in rivista | - |
| Guest Editor of Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms | Federico Manuel Giorgi | 2020-01-01 | BIOCHIMICA ET BIOPHYSICA ACTA. GENE REGULATORY MECHANISMS | - | 8.01 Ruolo editoriale in rivista | - |
| Gene regulatory network inference resources: A practical overview | Mercatelli D.; Scalambra L.; Triboli L.; Ray F.; Giorgi F.M. | 2020-01-01 | BIOCHIMICA ET BIOPHYSICA ACTA. GENE REGULATORY MECHANISMS | - | 1.01 Articolo in rivista | - |
| Corto: A lightweight R package for gene network inference and master regulator analysis | Mercatelli D.; Lopez-Garcia G.; Giorgi F.M. | 2020-01-01 | BIOINFORMATICS | - | 1.01 Articolo in rivista | OP-CBIO200223 3916..3917.pdf; bioinformatics_36_12_3916_s2.zip |
| Intra-tumoral copper modulates PD-L1 expression and influences tumor immune evasion | Voli, Florida; Valli, Emanuele; Lerra, Luigi; Kimpton, Kathleen; Saletta, Federica; Giorgi, Feder...ico M; Mercatelli, Daniele; Rouaen, Jourdin R C; Shen, Sylvie; Murray, Jayne E; Ahmed-Cox, Aria; Cirillo, Giuseppe; Mayoh, Chelsea; Beavis, Paul A; Haber, Michelle; Trapani, Joseph A; Kavallaris, Maria; Vittorio, Orazio | 2020-01-01 | CANCER RESEARCH | - | 1.01 Articolo in rivista | 237207_3_merged_1595291606.pdf |
| Gene network reverse engineering: The Next Generation | Giorgi F.M. | 2020-01-01 | BIOCHIMICA ET BIOPHYSICA ACTA. GENE REGULATORY MECHANISMS | - | 1.01 Articolo in rivista | - |
| Spathial: an R package for the evolutionary analysis of biological data | Gardini, Erika; Giorgi, Federico M; Decherchi, Sergio; Cavalli, Andrea | 2020-01-01 | BIOINFORMATICS | - | 1.01 Articolo in rivista | OP-CBIO200274 4664..4667.pdf |
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