Genomics is opening many interesting practical and theoretical computational problems; one of them is the search for a collection of genomic regions at given distances from each other, i.e., a pattern of genomic regions. We designed and implemented an optimized pattern-search algorithm able to find efficiently, within a large set of genomic data, genomic region sequences which are similar to a given pattern and present its applicability to the problem of enhancer detection.
Looking for Similar Patterns in Genomic Sequences / P. Montanari; I. Bartolini; P, Ciaccia; M. Patella; S. Ceri; M. Masseroli. - ELETTRONICO. - (2016), pp. 110-117. (Intervento presentato al convegno 24th Italian Symposium on Advanced Database Systems tenutosi a Ugento, Lecce, Italy nel June 19th – 22nd, 2016).
Looking for Similar Patterns in Genomic Sequences.
MONTANARI, PIERO;BARTOLINI, ILARIA;CIACCIA, PAOLO;PATELLA, MARCO;
2016
Abstract
Genomics is opening many interesting practical and theoretical computational problems; one of them is the search for a collection of genomic regions at given distances from each other, i.e., a pattern of genomic regions. We designed and implemented an optimized pattern-search algorithm able to find efficiently, within a large set of genomic data, genomic region sequences which are similar to a given pattern and present its applicability to the problem of enhancer detection.I documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.
