Sfoglia per Autore
Low duplicability and network fragility of cancer genes
2008 Rambaldi, Davide*; Giorgi, Federico M.; Capuani, Fabrizio; Ciliberto, Andrea; Ciccarelli, Francesca D.
Co-expression tools for plant biology: Opportunities for hypothesis generation and caveats
2009 Usadel, Björn; Obayashi, Takeshi; Mutwil, Marek; Giorgi, Federico M.; Bassel, George W.; Tanimoto, Mimi; Chow, Amanda; Steinhauser, Dirk; Persson, Staffan; Provart, Nicholas J.*
Transcriptional wiring of cell wall-related genes in Arabidopsis
2009 Mutwil, Marek; Ruprecht, Colin; Giorgi, Federico M.; Bringmann, Martin; Usadel, Björn; Persson, Staffan*
Algorithm-driven Artifacts in median polish summarization of Microarray data
2010 Giorgi, Federico M.; Bolger, Anthony M.; Lohse, Marc; Usadel, Bjoern*
Robin: An intuitive wizard application for R-based expression microarray quality assessment and analysis
2010 Lohse, Marc*; Nunes-Nesi, Adriano; Kruger, Peter; Nagel, Axel; Hannemann, Jan; Giorgi, Federico M.; Childs, Liam; Osorio, Sonia; Walther, Dirk; Selbig, Joachim; Sreenivasulu, Nese; Stitt, Mark; Fernie, Alisdair R.; Usadel, Bjorn
Structural analysis of the RZZ complex reveals common ancestry with multisubunit vesicle tethering machinery
2010 Çivril, Filiz; Wehenkel, Annemarie; Giorgi, Federico M.; Santaguida, Stefano; Di Fonzo, Andrea; Grigorean, Gabriela; Ciccarelli, Francesca D.; Musacchio, Andrea
Genomic and transcriptomic analysis of the AP2/ERF superfamily in Vitis vinifera
2010 Licausi, Francesco*; Giorgi, Federico M.; Zenoni, Sara; Osti, Fabio; Pezzotti, Mario; Perata, Pierdomenico
PlaNet: Combined sequence and expression comparisons across plant networks derived from seven species
2011 Mutwil, Marek; Klie, Sebastian; Tohge, Takayuki; Giorgi, Federico M.; Wilkins, Olivia; Campbell, Malcolm M.; Fernie, Alisdair R.; Usadel, Björn; Nikoloski, Zoran; Persson, Staffan*
Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization
2011 Licausi, Francesco; Kosmacz, Monika; Weits, Daan A.; Giuntoli, Beatrice; Giorgi, Federico M.; Voesenek, Laurentius A. C. J.; Perata, Pierdomenico; Van Dongen, Joost T.
HRE-type genes are regulated by growth-related changes in internal oxygen concentrations during the normal development of potato (solanum tuberosum) tubers
2011 Licausi, Francesco; Giorgi, Federico Manuel; Schmälzlin, Elmar; Usadel, Björn; Perata, Pierdomenico; Van Dongen, Joost Thomas; Geigenberger, Peter
SLocX: Predicting subcellular localization of Arabidopsis proteins leveraging gene expression data
2011 Ryngajllo, Malgorzata; Childs, Liam; Lohse, Marc; Giorgi, Federico M.; Lude, Anja; Selbig, Joachim; Usadel, Björn*
Expression-based reverse engineering of plant transcriptional networks
2012 Giorgi F,
Genomic approaches to unveil the physiological pathways activated in Arabidopsis treated with plant-derived raw extracts
2012 Santaniello, A.; Giorgi, F.M.; Tommaso, D. Di; Tommaso, G. Di; Piaggesi, A.; Perata, P.
Misexpression of a chloroplast aspartyl protease leads to severe growth defects and alters carbohydrate metabolism in arabidopsis
2012 Paparelli, Eleonora; Gonzali, Silvia; Parlanti, Sandro; Novi, Giacomo; Giorgi, Federico M.; Licausi, Francesco; Kosmacz, Monika; Feil, Regina; Lunn, John E.; Brust, Henrike; van Dongen, Joost T.; Steup, Martin; Perata, Pierdomenico*
LASSO modeling of the Arabidopsis thaliana seed/seedling transcriptome: A model case for detection of novel mucilage and pectin metabolism genes
2012 Vasilevski, Aleksandar; Giorgi, Federico M.; Bertinetti, Luca; Usadel, Björn
Transcriptome sequencing and microarray design for functional genomics in the extremophile arabidopsis relative thellungiella salsuginea (eutrema salsugineum)
2013 Lee, Yang P.; Giorgi, Federico M.; Lohse, Marc; Kvederaviciute, Kotryna; Klages, Sven; Usadel, Björn; Meskiene, Irute; Reinhardt, Richard; Hincha, Dirk K.*
An extensive evaluation of read trimming effects on illumina NGS data analysis
2013 Del Fabbro, Cristian; Scalabrin, Simone; Morgante, Michele; Giorgi, Federico M.
Comparative study of RNA-seq- and Microarray-derived coexpression networks in Arabidopsis thaliana
2013 Giorgi, Federico M.; Del Fabbro, Cristian; Licausi, Francesco
The NGS wikibook: A dynamic collaborative online training effort with long-termsustainability
2013 Li, Jing-Woei*; Bolser, Dan; Manske, Magnus; Giorgi, Federico Manuel; Vyahhi, Nikolay; Usadel, Björn; Clavijo, Bernardo J.; Chan, Ting-Fung; Wong, Nathalie; Zerbino, Daniel; Schneider, Maria Victoria
CEBPA-regulated lncRNAs, new players in the study of acute myeloid leukemia
2014 Hughes, James M.; Salvatori, Beatrice; Giorgi, Federico M.; Bozzoni, Irene; Fatica, Alessandro*
| Titolo | Autore(i) | Anno | Periodico | Editore | Tipo | File |
|---|---|---|---|---|---|---|
| Low duplicability and network fragility of cancer genes | Rambaldi, Davide*; Giorgi, Federico M.; Capuani, Fabrizio; Ciliberto, Andrea; Ciccarelli, Frances...ca D. | 2008-01-01 | TRENDS IN GENETICS | - | 1.01 Articolo in rivista | - |
| Co-expression tools for plant biology: Opportunities for hypothesis generation and caveats | Usadel, Björn; Obayashi, Takeshi; Mutwil, Marek; Giorgi, Federico M.; Bassel, George W.; Tanimoto..., Mimi; Chow, Amanda; Steinhauser, Dirk; Persson, Staffan; Provart, Nicholas J.* | 2009-01-01 | PLANT, CELL AND ENVIRONMENT | - | 1.01 Articolo in rivista | - |
| Transcriptional wiring of cell wall-related genes in Arabidopsis | Mutwil, Marek; Ruprecht, Colin; Giorgi, Federico M.; Bringmann, Martin; Usadel, Björn; Persson, S...taffan* | 2009-01-01 | MOLECULAR PLANT | - | 1.01 Articolo in rivista | - |
| Algorithm-driven Artifacts in median polish summarization of Microarray data | Giorgi, Federico M.; Bolger, Anthony M.; Lohse, Marc; Usadel, Bjoern* | 2010-01-01 | BMC BIOINFORMATICS | - | 1.01 Articolo in rivista | 1471-2105-11-553.pdf |
| Robin: An intuitive wizard application for R-based expression microarray quality assessment and analysis | Lohse, Marc*; Nunes-Nesi, Adriano; Kruger, Peter; Nagel, Axel; Hannemann, Jan; Giorgi, Federico M....; Childs, Liam; Osorio, Sonia; Walther, Dirk; Selbig, Joachim; Sreenivasulu, Nese; Stitt, Mark; Fernie, Alisdair R.; Usadel, Bjorn | 2010-01-01 | PLANT PHYSIOLOGY | - | 1.01 Articolo in rivista | - |
| Structural analysis of the RZZ complex reveals common ancestry with multisubunit vesicle tethering machinery | Çivril, Filiz; Wehenkel, Annemarie; Giorgi, Federico M.; Santaguida, Stefano; Di Fonzo, Andrea; G...rigorean, Gabriela; Ciccarelli, Francesca D.; Musacchio, Andrea | 2010-01-01 | STRUCTURE | - | 1.01 Articolo in rivista | - |
| Genomic and transcriptomic analysis of the AP2/ERF superfamily in Vitis vinifera | Licausi, Francesco*; Giorgi, Federico M.; Zenoni, Sara; Osti, Fabio; Pezzotti, Mario; Perata, Pie...rdomenico | 2010-01-01 | BMC GENOMICS | - | 1.01 Articolo in rivista | 1471-2164-11-719.pdf |
| PlaNet: Combined sequence and expression comparisons across plant networks derived from seven species | Mutwil, Marek; Klie, Sebastian; Tohge, Takayuki; Giorgi, Federico M.; Wilkins, Olivia; Campbell, ...Malcolm M.; Fernie, Alisdair R.; Usadel, Björn; Nikoloski, Zoran; Persson, Staffan* | 2011-01-01 | PLANT CELL | - | 1.01 Articolo in rivista | - |
| Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization | Licausi, Francesco; Kosmacz, Monika; Weits, Daan A.; Giuntoli, Beatrice; Giorgi, Federico M.; Voe...senek, Laurentius A. C. J.; Perata, Pierdomenico; Van Dongen, Joost T. | 2011-01-01 | NATURE | - | 1.01 Articolo in rivista | - |
| HRE-type genes are regulated by growth-related changes in internal oxygen concentrations during the normal development of potato (solanum tuberosum) tubers | Licausi, Francesco; Giorgi, Federico Manuel; Schmälzlin, Elmar; Usadel, Björn; Perata, Pierdomeni...co; Van Dongen, Joost Thomas; Geigenberger, Peter | 2011-01-01 | PLANT AND CELL PHYSIOLOGY | - | 1.01 Articolo in rivista | - |
| SLocX: Predicting subcellular localization of Arabidopsis proteins leveraging gene expression data | Ryngajllo, Malgorzata; Childs, Liam; Lohse, Marc; Giorgi, Federico M.; Lude, Anja; Selbig, Joachi...m; Usadel, Björn* | 2011-01-01 | FRONTIERS IN PLANT SCIENCE | - | 1.01 Articolo in rivista | fpls-02-00043.pdf |
| Expression-based reverse engineering of plant transcriptional networks | Giorgi F, | 2012-01-01 | - | LAP LAMBERT Academic Publishing | 3.01 Monografia / trattato scientifico in forma di libro | - |
| Genomic approaches to unveil the physiological pathways activated in Arabidopsis treated with plant-derived raw extracts | Santaniello, A.; Giorgi, F.M.; Tommaso, D. Di; Tommaso, G. Di; Piaggesi, A.; Perata, P. | 2012-01-01 | ACTA HORTICULTURAE | - | 1.01 Articolo in rivista | - |
| Misexpression of a chloroplast aspartyl protease leads to severe growth defects and alters carbohydrate metabolism in arabidopsis | Paparelli, Eleonora; Gonzali, Silvia; Parlanti, Sandro; Novi, Giacomo; Giorgi, Federico M.; Licau...si, Francesco; Kosmacz, Monika; Feil, Regina; Lunn, John E.; Brust, Henrike; van Dongen, Joost T.; Steup, Martin; Perata, Pierdomenico* | 2012-01-01 | PLANT PHYSIOLOGY | - | 1.01 Articolo in rivista | - |
| LASSO modeling of the Arabidopsis thaliana seed/seedling transcriptome: A model case for detection of novel mucilage and pectin metabolism genes | Vasilevski, Aleksandar; Giorgi, Federico M.; Bertinetti, Luca; Usadel, Björn | 2012-01-01 | MOLECULAR BIOSYSTEMS | - | 1.01 Articolo in rivista | - |
| Transcriptome sequencing and microarray design for functional genomics in the extremophile arabidopsis relative thellungiella salsuginea (eutrema salsugineum) | Lee, Yang P.; Giorgi, Federico M.; Lohse, Marc; Kvederaviciute, Kotryna; Klages, Sven; Usadel, Bj...örn; Meskiene, Irute; Reinhardt, Richard; Hincha, Dirk K.* | 2013-01-01 | BMC GENOMICS | - | 1.01 Articolo in rivista | 1471-2164-14-793.pdf |
| An extensive evaluation of read trimming effects on illumina NGS data analysis | Del Fabbro, Cristian; Scalabrin, Simone; Morgante, Michele; Giorgi, Federico M. | 2013-01-01 | PLOS ONE | - | 1.01 Articolo in rivista | - |
| Comparative study of RNA-seq- and Microarray-derived coexpression networks in Arabidopsis thaliana | Giorgi, Federico M.; Del Fabbro, Cristian; Licausi, Francesco | 2013-01-01 | BIOINFORMATICS | - | 1.01 Articolo in rivista | - |
| The NGS wikibook: A dynamic collaborative online training effort with long-termsustainability | Li, Jing-Woei*; Bolser, Dan; Manske, Magnus; Giorgi, Federico Manuel; Vyahhi, Nikolay; Usadel, Bj...örn; Clavijo, Bernardo J.; Chan, Ting-Fung; Wong, Nathalie; Zerbino, Daniel; Schneider, Maria Victoria | 2013-01-01 | BRIEFINGS IN BIOINFORMATICS | - | 1.01 Articolo in rivista | - |
| CEBPA-regulated lncRNAs, new players in the study of acute myeloid leukemia | Hughes, James M.; Salvatori, Beatrice; Giorgi, Federico M.; Bozzoni, Irene; Fatica, Alessandro* | 2014-01-01 | JOURNAL OF HEMATOLOGY & ONCOLOGY | - | 1.01 Articolo in rivista | - |
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